来自Alcaligenes faecalis的酸盐氧化酶的活性部位
Thomas Conrads1, Craig Hemann, Graham N George
1Department of Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA.
Journal of the American Chemical Society
|September 19, 2002
概括
酸氧化酶是一种酶,具有独特的辅因子结构. 它的活性部位显示出明显的Mo-S键动态和pterin芳香性,这表明它在酶进化中的中间结构作用.
科学领域:
- 生物化学 生物化学
- 酶动力学 酶动力学
- 结构生物学是结构生物学.
背景情况:
- 酸盐氧化酶是氧化中的关键酶,属于酶的DMSO减少酶家族.
- 酶利用多辅因子进行其催化活动,结构变化影响功能.
研究的目的:
- 为了阐明酸氧化酶中活性位点的结构和电子特性.
- 了解在酶降解过程中辅因子及其协调环境的作用.
主要方法:
- 采用X射线吸收光谱 (XAS) 探测了-联体键距离和氧化状态.
- 共振拉曼光谱法被用来研究素辅因子的电子结构和芳香度.
主要成果:
- XAS揭示了减少时Mo-S键的缩短,以及一个oxo连接体的存在,在氧化状态下具有暂时的Mo-O键.
- 共振拉曼光谱显示了两种氨酸二硫烯部分 (Q-氨酸和P-氨酸) 之间的芳香度差异.
结论:
- 酸盐氧化酶的结构和电子特性表明,典型的酶和酶之间存在中间状态.
- 独特的蛋白结构和Mo-S键动态有助于酶的催化机制和进化定位.
相关概念视频
Allosteric Proteins-ATCase
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
Metabolism of Chemolithotrophs
Chemolithotrophs are microorganisms that obtain energy by oxidizing inorganic molecules such as hydrogen gas (H₂), ammonia (NH₃), reduced sulfur compounds (H₂S, S²⁻), and ferrous iron (Fe²⁺). Unlike heterotrophic organisms that rely on organic carbon, chemolithotrophs transfer electrons from these inorganic donors to the electron transport chain (ETC), generating a proton motive force (PMF) that drives ATP synthesis through oxidative phosphorylation. However, because inorganic electron donors...
Amino Acid Catabolism
Microorganisms rely on proteins as an essential carbon and energy source, particularly in environments with limited polysaccharides or lipids. However, proteins are too large to cross the plasma membrane unaided, necessitating enzymatic degradation. Microbes secrete extracellular proteases and peptidases that hydrolyze proteins into peptides, which can then be transported across the membrane. Once inside the cell, intracellular proteases degrade these peptides into free amino acids, which...
Carbon-dioxide Fixation
Carbon dioxide fixation in prokaryotes enables the assimilation of inorganic carbon into organic molecules, supporting biosynthetic pathways, sustaining ecosystems, and contributing to the global carbon cycle. It also has industrial applications in carbon capture and bioproduct synthesis. Autotrophic organisms rely on this process to utilize CO₂ as a carbon source in diverse environments.The Calvin CycleThe Calvin cycle is the most widespread carbon fixation mechanism, primarily used by...
Acid Mine Drainage
Mining activities that disturb sulfide-rich rocks, particularly those containing pyrite (FeS₂), initiate a cascade of geochemical and microbiological processes with serious environmental implications. When exposed to air and water, pyrite undergoes oxidation, releasing sulfate, ultimately forming sulfuric acid and mobilizing heavy metals into surrounding water systems. This phenomenon, known as acid mine drainage (AMD), results in low pH waters laden with toxic elements that threaten aquatic...
Production of Organic Acids
Lactic acid, an important organic acid extensively applied in food, pharmaceutical, and biodegradable polymer industries, is primarily produced via microbial fermentation. This method is favored over chemical synthesis due to its environmental sustainability and capacity for enantiomerically pure product formation. Among various microbial processes, the fermentation of starch-based substrates stands out due to the abundance and renewability of raw materials like corn and potatoes.Hydrolysis of...


