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相关概念视频

Ligand Binding and Linkage00:49

Ligand Binding and Linkage

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
SN2 Reaction: Transition State02:26

SN2 Reaction: Transition State

An SN2 reaction of an alkyl halide is a single-step process in which bond formation between the nucleophile and the substrate and bond breaking between the substrate and the halide occurs simultaneously through a transition state without forming an intermediate.
When the nucleophile approaches the electrophilic carbon with its lone pairs, the halide acts as a leaving group and moves away with the electron-pair bonded to the carbon. Dotted partial bonds represent the bonds being formed or broken...
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Crossed Aldol Reactions: Overview01:04

Crossed Aldol Reactions: Overview

Crossed aldol addition is the reaction between two different carbonyl compounds under acidic or basic conditions. Here, both the carbonyl compounds function as nucleophiles and electrophiles. As shown in Figure 1, such a reaction yields a mixture of products, two of which are formed via self-condensation, while the remaining two are formed via crossed-condensation. Without adjustment, the reaction's usefulness in organic chemistry is decreased.

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Optimizing the Genetic Incorporation of Chemical Probes into GPCRs for Photo-crosslinking Mapping and Bioorthogonal Chemistry in Live Mammalian Cells
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通过在堆叠状态下最接近邻居的相互作用,在二核酸 (3'-->5') 单酸中对aglycones的物理化学特性进行交叉调节.

S Acharya1, P Acharya, A Földesi

  • 1Department of Bioorganic Chemistry, Box 581, Biomedical Center, Uppsala University, S-751 23 Uppsala, Sweden.

Journal of the American Chemical Society
|November 15, 2002
PubMed
概括

堆叠的DNA中的核基 (二核单酸盐) 由于电荷转移而相互影响彼此的酸度 (pK(a)). 这种交叉对话改变了它们的电子特性,影响了DNA的结构和功能.

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科学领域:

  • 生物化学 生物化学
  • 分子生物学分子生物学
  • 物理化学 物理化学

背景情况:

  • DNA 中的核基具有独特的电子特性,受其环境的影响.
  • 在二核糖单酸盐中的分子内堆叠创造了一个独特的微环境.
  • 了解核基相互作用对于DNA结构-功能关系至关重要.

研究的目的:

  • 调查堆叠对二核酸单酸盐中核基pK (a) 的影响.
  • 为了阐明邻近核基之间的电荷传输机制.
  • 探索这些调制性质对寡核酸行为的影响.

主要方法:

  • 采用了质子核磁共振 ((1) H NMR) 光谱学.
  • 通过一系列pH条件 (酸性和性) 进行了研究.
  • 分析的重点是二核糖 (3'-->5') 单酸盐.

主要成果:

  • 堆叠的核基表现出改变的pK (a) 值,反映出电子特征的交叉调制.
  • 观察到邻近的酸糖体之间的双向电荷传输 (3'-->5'和5'-->3').
  • 原子-pi-sigma相互作用介于堆叠状态下的电荷传输.

结论:

  • 内分子堆叠永久调节核基的伪芳香性质.
  • 寡核酸中核基的电子特性依赖于序列,并且可以调节.
  • 这些发现对阿普坦酶结合,结合和子相互作用有影响.