核糖体对tRNA的选择需要从开放形式过渡到封闭形式
James M Ogle1, Frank V Murphy, Michael J Tarry
1MRC Laboratory of Molecular Biology, Hills Road, CB2 2QH, Cambridge, United Kingdom.
Cell
|December 5, 2002
概括
从结构上解释了转移RNA (tRNA) 的核糖体选择. 接近同源的tRNAs是不利的解溶,需要一个封闭的30S核糖体亚单元构成,以进行准确的tRNA选择.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 生物化学 生物化学
背景情况:
- 在蛋白质合成过程中,核糖体选择正确的转移RNA (tRNA) 的机制仍然不完全理解.
- 了解翻译忠实性对于破译基因表达和疾病机制至关重要.
研究的目的:
- 为核糖体对tRNA进行选择提供结构和机制基础.
- 阐明核糖体构成在转化忠实性中的作用.
主要方法:
- 30S核糖体子单元的X射线晶体学结合于子和近同类tRNA抗子干环.
- 基于溶液的同等核糖体-tRNA复合体的亲和度测量.
主要成果:
- 晶体结构揭示了近同类tRNA如何与30S解码中心相互作用.
- 在近同类相互作用中,与沃森-克里克几何学的偏差会导致不利的溶解.
- 一个由相关的tRNAs诱导的封闭的30S构造,对于选择至关重要,并且对没有辅助分子的近相关的tRNAs不利,比如paromomycin.
结论:
- 关闭的30S核糖体亚单元构造的稳定是准确的tRNA选择的关键要求.
- 这种结构机制解释了以前关于转化忠实度和抗生素 (如帕罗摩辛) 的作用的观察.
相关概念视频
Transfer RNA Synthesis
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Improving Translational Accuracy
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
Initiation of Translation
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Termination of Translation
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
Transfer RNA Synthesis
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Initiation of Translation
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...


