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Analyzing and Building Nucleic Acid Structures with 3DNA
Published on: April 26, 2013
核酶体核心中的DNA结构
Timothy J Richmond1, Curt A Davey
1ETH Zürich, Institut für Molekularbiologie und Biophysik, ETH-Hönggerberg, CH-8093 Zürich. richmond@mol.biol.ethz.ch
Nature
|May 9, 2003
概括
核的核心粒子是核的核心粒子.
科学领域:
- 结构生物学 结构生物学
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
背景情况:
- 核素是真核生物中DNA包装的基本单元.
- 了解核体结构对于理解基因调节和DNA可访问性至关重要.
- 之前的研究缺乏核子体内DNA构成的高分辨率细节.
研究的目的:
- 为了确定核细胞核粒子的高分辨率晶体结构.
- 为了阐明核体内DNA的精确构造.
- 为了研究基因组蛋白如何影响DNA结构和对染色质动态的影响.
主要方法:
- 在1.9-Å分辨率的X射线晶体学.
- 对DNA基基对步骤几何学的分析.
- 不同核细胞核粒子结构 (147对146个基对) 的比较.
主要成果:
- 核体DNA的构造与其他DNA复合体有很大的不同.
- DNA的曲率大约是其超螺旋路径所需曲率的两倍.
- 在DNA片段曲到小槽中观察到曲和转移.
- 希斯结合会诱导不寻常的DNA构造参数.
- 在大量染色体中,DNA扭曲的变化是明显的,影响染色体纤维的形成和重塑.
结论:
- 核体DNA具有独特的,高度曲的形状,是由基质子相互作用决定的.
- 这些结构性发现提供了对依赖序列的蛋白质结合和核细胞组定位的见解.
- 观察到的DNA扭曲变化对高阶染色质结构和染色质重塑等动态过程至关重要.
相关概念视频
The DNA Helix
Overview
The DNA Helix
Overview
The Nucleosome
DNA in a human cell is almost 2m long and it is packed inside a tiny nucleus that is only a few microns in diameter. The level of compaction of DNA inside the nucleus is astonishing. It is organized into several sequentially higher levels of compaction to fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
The DNA Helix
Deoxyribonucleic acid, or DNA, is the genetic material responsible for passing traits from generation to generation in all organisms and most viruses. DNA is composed of two strands of nucleotides that wind around each other to form a spring-like structure called a double helix. However, the double helix is not perfectly symmetrical. Instead, there are regularly occurring grooves in the structure. The major groove occurs where the sugar-phosphate backbones are relatively far apart. This space...
The Nucleosome
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
Nucleic Acid Structure
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...
DNA Structure
DNA has a double-helix structure. The...

