相关实验视频
Updated: May 17, 2026

07:44
Design and Synthesis of a Reconfigurable DNA Accordion Rack
Published on: August 15, 2018
6.7K
在DNA中可逆的B<=>A转换的化定位
1Laboratoire de Biochimie Théorique, CNRS UPR9080, Institut de Biologie Physico-Chimique 13, rue Pierre et Marie Curie, Paris 75005, France. alexey@ibpc.fr
Journal of the American Chemical Society
|June 26, 2003
概括
分子动力学模拟显示,DNA可以在A型和B型之间切换. 这种DNA多态性是由离子和水分水平驱动的,这对于理解DNA结构至关重要.
科学领域:
- 生物物理学的生物物理.
- 计算生物学 计算生物学
- 分子生物学分子生物学
背景情况:
- DNA存在各种结构形式,包括A和B形式.
- 了解驱动DNA结构转变的因素是分子生物学的关键.
研究的目的:
- 通过模拟研究可逆A和BDNA转换的分子机制.
- 探索水合和离子度对DNA结构的影响.
主要方法:
- 单个DNA双螺旋的自由分子动力学模拟.
- 通过改变水滴大小进行in silico定位.
- 对链条长度和NaCl度影响的分析.
主要成果:
- 模拟显示可逆的A-和B-DNA转换与合作动态.
- 短于1个螺旋转的DNA阻碍了B到A的过渡.
- 增加的NaCl稳定B-DNA,并导致盐结晶.
结论:
- 在低水分状态下,B向A的过渡是由主要槽中的Na+离子通过静电相互作用驱动的.
- 减少的水会增加对子离子度,从而促进过渡.
- 这种机制可能解释了一般的A/B DNA多态性.
相关概念视频
Base Excision Repair
One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
The first step of...
Gene Conversion
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
DNA-only Transposons
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
The donor site from where the transposon is excised is either degraded or...
Conservative Site-specific Recombination and Phase Variation
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
Gene Conversion
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
Point and Frameshift Mutations
Point mutations are genetic alterations involving the change of a single nucleotide base pair in DNA. Depending on how the alteration affects protein synthesis, they can lead to various consequences.Point mutations fall into the following types:Silent mutations occur when a nucleotide change does not alter the amino acid sequence due to the redundancy of the genetic code. For instance, changing ACC to ACA still encodes threonine, leaving the protein function unaffected. This occurs because...

