对于螺旋式40kDa膜蛋白的NMR分配
Kirill Oxenoid1, Hak Jun Kim, Jaison Jacob
1Department of Biochemistry and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37232-8725, USA.
Journal of the American Chemical Society
|April 22, 2004
概括
实现了核磁共振 (NMR) 赋值,用于二甲基酶 (DAGK),一个螺旋膜蛋白. 这证明了NMR的存在.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 生物物理学的生物物理.
背景情况:
- 糖醇激酶 (DAGK) 是细胞信号传递中的关键酶.
- 集成膜蛋白对结构确定具有重大挑战.
- 了解DAGK结构对于阐明其监管机制至关重要.
研究的目的:
- 为了获得脊柱核磁共振 (NMR) 赋值用于二甲酸甘激酶 (DAGK).
- 评估使用溶液NMR用于螺旋整体膜蛋白的结构研究的可行性.
主要方法:
- 使用基于TROSY的脉冲序列进行NMR赋值.
- 在洗剂微粒中研究DAGK,以模仿其本土环境.
- 分析了一种由121个残留子单元组成的同位三元整体膜蛋白.
主要成果:
- 成功完成了DAGK的骨干NMR任务.
- 确定DAGK几乎完全是一个螺旋状蛋白质.
- 证实了每个子单元有三个跨膜段的存在.
结论:
- 溶液NMR是一种可行的方法来确定DAGK的结构.
- 核磁共振可以有效地用于复杂螺旋膜蛋白的结构研究.
- 这项研究为未来对DAGK和相关蛋白质的结构研究提供了基础.
相关概念视频
¹H NMR: Complex Splitting
A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied first.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied first.
¹H NMR: Interpreting Distorted and Overlapping Signals
Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
¹H NMR Signal Multiplicity: Splitting Patterns
When protons A and X are coupled, their nuclear spin energy levels are slightly modified. This is because the energy required to excite proton A to a spin state parallel to proton X is slightly different from the energy required for it to become anti-parallel to spin X. Consequently, there are two possible excitation frequencies for A (A1 and A2), depending on the spin state of X, and vice versa. The mutual nature of coupling implies that the difference between frequencies A1 and A2, indicated...
Interpreting ¹H NMR Signal Splitting: The (n + 1) Rule
In the AX proton spin system, proton A can sense the two spin states of a coupled proton X, resulting in a doublet NMR signal with two peaks of equal (1:1) intensity. When proton A is coupled to two equivalent protons (AX2 spin system), the spin states of each X can be aligned with or against the external field, creating three possible scenarios. This results in a 1:2:1 triplet signal, where the central peak corresponds to the chemical shift of A and is twice as large or intense as the others.
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR
The axial and equatorial protons in cyclohexane can be distinguished by performing a variable-temperature NMR experiment. In this process, except for one proton, the remaining eleven protons are replaced by deuterium. The deuterium substitution avoids the possible peak splitting caused by the spin-spin coupling between the adjacent protons. The remaining proton flips between the axial and equatorial positions.
Other Nuclides: 31P, 19F, 15N NMR
Many organic, inorganic, and biological molecules contain spin-half nuclei such as nitrogen-15, fluorine-19, and phosphorus-31. As a result, NMR studies of these nuclei have found extensive applications in chemical and biological research.
While fluorine-19 and phosphorous-31 have high natural abundances (100%) and positive gyromagnetic ratios, nitrogen-15 has a low natural abundance and a negative gyromagnetic ratio. However, nitrogen-15 is still preferred over nitrogen-14 (which has a high...
While fluorine-19 and phosphorous-31 have high natural abundances (100%) and positive gyromagnetic ratios, nitrogen-15 has a low natural abundance and a negative gyromagnetic ratio. However, nitrogen-15 is still preferred over nitrogen-14 (which has a high...


