酵母Rat1外核酶通过RNA聚合酶II促进转录终止
Minkyu Kim1, Nevan J Krogan, Lidia Vasiljeva
1Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA.
Nature
|November 27, 2004
概括
RNA聚合酶II碳氧终端域酸化调节了mRNA的处理. 鼠1/Rai1外核酶降解3RNA,从而触发了在多基化位点的转录终止.
科学领域:
- 分子生物学分子生物学
- 基因表达 基因表达
- 处理RNA处理RNA处理
背景情况:
- RNA聚合酶II (RNApII) 的碳氧终端域 (CTD) 通过酸化模式协调转录与mRNA处理.
- 特定的CTD酸化,如血清二,招募了对于mRNA处理和转录终止都必不可少的多基化因子.
研究的目的:
- 研究Rtt103和Rat1/Rai1外核酶在转录终结中的作用.
- 阐明合聚基解位裂变与RNA聚合酶II转录终结的机制.
主要方法:
- 在基因3'端对Rtt103和Rat1/Rai1进行局部化研究.
- 在突变细胞 (rat1-1, rai1Delta) 中分析RNA稳定性和转录终止.
主要成果:
- Rtt103和Rat1/Rai1定位在蛋白质编码基因的3'端.
- 在Rat1或Rai1中发生的突变导致RNA在多基化位点下游的稳定.
- 在许多基因中观察到终结缺陷,缺少功能性的Rat1/Rai1.1.
结论:
- 聚基化位点裂变是Rat1/Rai1外核酶下游RNA降解的先决条件.
- 通过Rat1/Rai1降解3'-下游RNA是一个关键事件,触发转录终止.
相关概念视频
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
Transcription Attenuation in Prokaryotes
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
Bacterial Transcription
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription Initiation
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
Transcriptional Regulation: Riboswitches
Riboswitches are RNA elements that regulate gene expression by altering their secondary structures in response to specific effector molecules. These elements, located in the leader regions of certain mRNAs, act as transcriptional regulators by toggling between alternative conformations to control downstream gene expression. Riboswitch-mediated regulation is a precise mechanism for modulating biosynthetic pathways, as exemplified by the riboflavin biosynthesis pathway in Bacillus...


