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在Ruma-RNA-共因子三元复合体中的一个独特的RNA折叠有助于基质选择性和酶功能
Tom T Lee1, Sanjay Agarwalla, Robert M Stroud
1Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94143, USA.
Cell
|March 16, 2005
概括
RumA酶通过重新折叠RNA基质来精确地甲基化大肠杆菌23S核糖体RNA中的特定基. 这种结构揭示了RNA如何积极参与催化,表明古代RNA与蛋白质的相互作用.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 核糖体RNA (rRNA) 修饰对于蛋白质合成至关重要.
- 鲁马是负责甲基化大肠杆菌23SrRNA中的U1939的特定酶.
- 了解酶基质相互作用是阐明催化机制的关键.
研究的目的:
- 确定Ruma在甲基化大肠杆菌23SrRNA中的独特选择性的结构基础.
- 揭示RNA基质在催化中积极参与的机制.
- 探索早期RNA-蛋白相互作用的潜在进化见解.
主要方法:
- 进行X射线晶体学以确定Ruma/RNA/S-adenosylhomocysteine复合物的结构.
- 结构分析以确定关键的RNA-酶相互作用和构造变化.
- 生物化学试验以评估催化效率和基质结合.
主要成果:
- 结构显示Ruma"重新折叠"单链RNA基质成一个紧的形状.
- 第二个基被"翻转出来",与S-adenosylhomocysteine辅因子相互作用,而 permuted 核酸填补了空的位置.
- RNA的3'发针与远距离结合,从而贡献结合能量并提高催化效率.
结论:
- 通过广泛的RNA重新折叠和特定的相互作用,RumaA实现了独特的选择性.
- RNA基质在催化机制中发挥着积极的作用,而不仅仅是被动目标.
- 这些发现表明,Ruma及其RNA基质可能代表一种古老的RNA-蛋白合作形式.
相关概念视频
RNA Structure
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
RNA Structure
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
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Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
RNA Structure
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Bacterial RNA Polymerase
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Nucleic Acid Structure
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...
DNA Structure
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