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相关概念视频

Colors and Magnetism03:02

Colors and Magnetism

Color in Coordination Complexes
When atoms or molecules absorb light at the proper frequency, their electrons are excited to higher-energy orbitals. For many main group atoms and molecules, the absorbed photons are in the ultraviolet range of the electromagnetic spectrum, which cannot be detected by the human eye. For coordination compounds, the energy difference between the d orbitals often allows photons in the visible range to be absorbed and emitted, which is seen as colors by the human eye.
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...
Ladder Diagrams: Complexation Equilibria01:07

Ladder Diagrams: Complexation Equilibria

Ladder diagrams are useful for evaluating equilibria involving metal-ligand complexes. The vertical scale of the ladder diagram represents the concentration of unreacted or free ligand, pL. The horizontal lines on the scale depict the log of stepwise formation constants for metal-ligand complexes and indicate the dominant species in all the regions.
The formation constant, K1, for the formation of Cd(NH3)2+ complex from cadmium and ammonia is 3.55 × 102. Log K1 (i.e. pNH3) is 2.55, and...
Complexation Equilibria: The Chelate Effect01:19

Complexation Equilibria: The Chelate Effect

In complexation reactions, metal atoms or cations interact with ligands to form donor-acceptor adducts called metal complexes. Ligands that bind through one donor site are monodentate, ligands with two donor sites are bidentate, and those with more than two donor sites are polydentate ligands. For example, ethylene diamine is a bidentate ligand that binds through two nitrogen donor atoms, forming a five-membered ring. EDTA is a polydentate ligand that binds through four oxygen and two nitrogen...
EDTA: Auxiliary Complexing Reagents01:26

EDTA: Auxiliary Complexing Reagents

EDTA titrations are usually carried out in highly basic conditions, where the fully deprotonated form of EDTA, Y4−, actively complexes with the free metal ions in the solution. Several metal ions precipitate as hydrous oxide (hydroxides, oxides, or oxyhydroxides) under these conditions, lowering the concentration of free metal ions in the solution. For this reason, auxiliary complexing agents or ligands such as ammonia, tartrate, citrate, or triethanolamine are used in EDTA titrations to...
Complexation Equilibria: Factors Influencing Stability of Complexes01:09

Complexation Equilibria: Factors Influencing Stability of Complexes

In complexation reactions, metal cations are the electron pair acceptors, and the ligands are the electron pair donors. The stability of the metal complexes depends primarily on the complexing ability of the central metal ion and the nature of the ligands. Generally, the complexing ability of the metal ion depends on the size and charge of the ion. As the metal ion size increases, the stability of the metal complexes decreases, provided that the valency of the metal ion and the ligands remain...

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相关实验视频

Updated: Jul 9, 2026

Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
11:04

Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides

Published on: September 7, 2019

Zn-His-Bkb与Zn-His-[Asp/Glu]三元组对Zn核稳定性和反应性的不同影响

Yen-Lin Lin1, Yu-Ming Lee, Carmay Lim

  • 1Institute of Biomedical Sciences, Academia Sinica, Taipei 115, Taiwan ROC.

Journal of the American Chemical Society
|August 11, 2005
PubMed
概括

在部位的胺 (His) 与结构部位的骨干碳基或催化部位的碳酸盐相互作用. 本研究解释了这些偏好基于溶剂可访问性和位点组成,影响芯稳定性和反应性.

科学领域:

  • 生物化学和分子生物学
  • 计算化学计算化学
  • 生物有机化学 生物有机化学

背景情况:

  • 结合的histidine (His) 通常在结构部位与骨干碳基相互作用.
  • 在催化部位中,His通常与酸/酸 (Asp/Glu) 碳酸盐相互作用.
  • 控制这种差异性相互作用的因素尚未完全理解.

研究的目的:

  • 阐明了决定选择Zn结合的第二伴侣的因素.
  • 为了比较骨干碳酸和Asp/Glu碳酸盐对Zn-core稳定性和反应性的贡献.

主要方法:

  • 使用密度函数理论 (DFT) 的系统研究.
  • 连续介电计算以评估相对贡献.
  • 对溶剂可访问性和 Zn-核心组成的分析.

主要成果:

  • 脊柱碳基稳定了结构部位的埋藏,阴离子Zn核心,解释了Zn-His-Asp/Glu三合体的缺失.
  • Asp/Glu碳酸盐通过增加HOMO能量,OH-反应性,电子转移和复合稳定性来增强催化 Zn-核心.
  • Asp/Glu碳酸盐可能通过质子化His.促进产品在催化位点的释放.

结论:

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The Development and Application of Biophysical Assays for Evaluating Ternary Complex Formation Induced by Proteolysis Targeting Chimeras (PROTACS)
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The Development and Application of Biophysical Assays for Evaluating Ternary Complex Formation Induced by Proteolysis Targeting Chimeras (PROTACS)

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Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
11:04

Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides

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Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry
16:11

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry

Published on: June 8, 2022

The Development and Application of Biophysical Assays for Evaluating Ternary Complex Formation Induced by Proteolysis Targeting Chimeras (PROTACS)
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The Development and Application of Biophysical Assays for Evaluating Ternary Complex Formation Induced by Proteolysis Targeting Chimeras (PROTACS)

Published on: January 12, 2024

  • 第二层合作伙伴的选择是由溶剂可访问性和 Zn-core 特性决定的.
  • 骨干碳基因在结构性部位中受青,而Asp/Glu碳酸盐在催化部位中具有优势.
  • 这些相互作用对于结构性和催化金属酶的独特功能至关重要.