一个人类蛋白质-蛋白质相互作用网络:用于注释蛋白质组的资源.
Ulrich Stelzl1, Uwe Worm, Maciej Lalowski
1Max Delbrueck Center for Molecular Medicine, 13092 Berlin-Buch, Germany.
Cell
|September 20, 2005
概括
这项研究使用酵母二混合查系统地绘制了人类蛋白质与蛋白质相互作用的地图,揭示了3186个相互作用的庞大网络. 确定了高可信度相互作用,揭示了对细胞通路和蛋白质功能的新见解.
科学领域:
- 蛋白质组学是指蛋白质组学.
- 系统生物学 系统生物学
- 分子生物学分子生物学
背景情况:
- 蛋白与蛋白相互作用 (PPI) 对于理解细胞过程和蛋白质组组织至关重要.
- 系统地映射PPI提供了功能网络的全面视图.
研究的目的:
- 系统地识别人类蛋白质的相互作用对.
- 构建一个庞大的,高度连接的人类蛋白质-蛋白质相互作用网络.
- 识别新型蛋白相互作用及其在细胞通路中的作用.
主要方法:
- 采用自动化的酵母双杂交 (Y2H) 交互交配来选4456个诱和5632只猎物的矩阵.
- 独立的拉下和共免疫沉试验被用于验证.
- 应用了拓学和基因本体学 (GO) 标准来评分和定义高可信度相互作用.
主要成果:
- 确定了3186种主要是新型的PPI,涉及1705种蛋白质,形成了一个大而高度连接的网络.
- 通过独立测定验证了Y2H相互作用的整体质量.
- 在401种蛋白质中定义了911种高可信度相互作用.
- 发现了新的相互作用,将未表征的蛋白质和疾病蛋白与调节通路联系起来,包括两个经过验证的Axin-1相互作用.
结论:
- 系统的PPI屏幕对于了解蛋白质功能和细胞过程是有效的.
- 生成的人类PPI网络为进一步的生物研究提供了宝贵的资源.
- 确定了Wnt信号的新型调节器,突出了PPI映射在疾病相关路径分析中的实用性.
相关概念视频
Protein-protein Interfaces
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a polypeptide...
Protein Complexes with Interchangeable Parts
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
Protein Networks
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Protein-Protein Interfaces
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a polypeptide...
Protein Complexes with Interchangeable Parts
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
Protein Networks
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...


