相关实验视频
Updated: Jul 6, 2026

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Light-driven Enzymatic Decarboxylation
Published on: May 22, 2016
烯环氧化酶的催化机制,一个理论研究的理论研究
Kathrin H Hopmann1, B Martin Hallberg, Fahmi Himo
1Theoretical Chemistry, Department of Biotechnology, Royal Institute of Technology, AlbaNova University Center, SE-106 91 Stockholm, Sweden.
Journal of the American Chemical Society
|October 13, 2005
概括
这项研究使用计算方法揭示了烯环氧化酶 (LEH) 的催化机制. 在LEH中,使用协同的一般酸催化方法,从氧化-1,2-氧化物中生产烯-1,2-二醇.
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 计算化学的计算化学
背景情况:
- 烯环氧化酶 (LEH) 是 Rhodococcus erythropolis DCL14 中一种新的烯降解途径的关键.
- 在LEH的催化作用下,氨基-1,2-环氧化物被水解成氨基-1,2-二醇.
研究的目的:
- 阐明烯环氧化酶 (LEH) 的催化机制.
- 为了解释在烯环氧化物立体异构体的水解中观察到的区域选择性.
主要方法:
- 使用密度函数理论 (DFT) 与B3LYP方法进行理论研究.
- 基于晶体结构的LEH活性部位建模,包括关键氨基酸 (Asp101,Asp132) 和水分子.
主要成果:
- 催化机制涉及协调的一般酸/一般催化.
- Asp101对基质进行质子化,而Asp132从攻击的水分子中抽取一个质子.
- 该模型解释了实验观察到的利蒙-1,2-环氧化物立体异构体的区域选择性水解.
结论:
- 对于环氧化物水解来说,LEH采用了一种特殊的催化机制,涉及酸和残留物.
- 这些发现为LEH在烯代谢中的功能和特异性提供了分子洞察力.
相关概念视频
Oxidation of Alkenes: Anti Dihydroxylation with Peroxy Acids
Diols are compounds with two hydroxyl groups. In addition to syn dihydroxylation, diols can also be synthesized through the process of anti dihydroxylation. The process involves treating an alkene with a peroxycarboxylic acid to form an epoxide. Epoxides are highly strained three-membered rings with oxygen and two carbons occupying the corners of an equilateral triangle. This step is followed by ring-opening of the epoxide in the presence of an aqueous acid to give a trans diol.
Preparation of Epoxides
Overview
Epoxides result from alkene oxidation, which can be achieved by a) air, b) peroxy acids, c) hypochlorous acids, and d) halohydrin cyclization.
Epoxidation with Peroxy Acids
Epoxidation of alkenes via oxidation with peroxy acids involves the conversion of a carbon–carbon double bond to an epoxide using the oxidizing agent meta-chloroperoxybenzoic acid, commonly known as MCPBA. Since the O–O bond of peroxy acids is very weak, the addition of electrophilic oxygen of peroxy acids to...
Epoxides result from alkene oxidation, which can be achieved by a) air, b) peroxy acids, c) hypochlorous acids, and d) halohydrin cyclization.
Epoxidation with Peroxy Acids
Epoxidation of alkenes via oxidation with peroxy acids involves the conversion of a carbon–carbon double bond to an epoxide using the oxidizing agent meta-chloroperoxybenzoic acid, commonly known as MCPBA. Since the O–O bond of peroxy acids is very weak, the addition of electrophilic oxygen of peroxy acids to...
Sharpless Epoxidation
The conversion of allylic alcohols into epoxides using the chiral catalyst was discovered by K. Barry Sharpless and is known as Sharpless epoxidation. The use of a chiral catalyst enables the formation of one enantiomer of the product in excess. This chiral catalyst is mainly a chiral complex of titanium tetraisopropoxide and tartrate ester (specific stereoisomer). The stereoisomer used in the chiral catalyst dictates the formation of the enantiomer of the product. In other words, the use of...
Acid-Catalyzed Ring-Opening of Epoxides
Epoxides that are three-membered ring systems are more reactive than other cyclic and acyclic ethers. The high reactivity of epoxides originates from the strain present in the ring. This ring strain acts as a driving force for epoxides to undergo ring-opening reactions either with halogen acids or weak nucleophiles in the presence of mild acid. The acid catalyst converts the epoxide oxygen, a poor leaving group, into an oxonium ion, a better leaving group, making the reaction feasible. The...
Base-Catalyzed Ring-Opening of Epoxides
Due to their highly strained structures, epoxides can readily undergo ring-opening reactions through nucleophilic substitution, either in the presence of an acid or a base. The nucleophilic substitution reactions in the presence of acid are called acid-catalyzed ring-opening reactions, and nucleophilic substitution reactions in the presence of a base are called base-catalyzed ring-opening reactions. Epoxides undergo base-catalyzed ring-opening reactions in the presence of a strong nucleophile...
Esters to Carboxylic Acids: Acid-Catalyzed Hydrolysis
Hydrolysis of esters under acidic conditions proceeds through a nucleophilic acyl substitution. In the presence of excess water, the reaction proceeds in a reversible manner, forming carboxylic acids and alcohols.
During hydrolysis, the ester is first activated towards nucleophilic attack through the protonation of the carboxyl oxygen atom by the acid catalyst. The protonation makes the ester carbonyl carbon more electrophilic. In the next step, water acts as a nucleophile and adds to the...
During hydrolysis, the ester is first activated towards nucleophilic attack through the protonation of the carboxyl oxygen atom by the acid catalyst. The protonation makes the ester carbonyl carbon more electrophilic. In the next step, water acts as a nucleophile and adds to the...

