一个古老的适应性景观的生物化学结构
Mark Lunzer1, Stephen P Miller, Roderick Felsheim
1BioTechnology Institute, Evolution and Behavior, University of Minnesota, St. Paul, MN 55108, USA.
概括
研究人员绘制了异甲酸脱酶 (IMDH) 的健身格局,揭示了NAD使用是最佳的酶功能. 这项研究有助于预测分子进化中的突变适应效应.
科学领域:
- 分子进化分子进化
- 生物化学 生物化学
- 酵素工程是什么意思 酵素工程
背景情况:
- 分子进化研究正在从描述适应性变化转向预测突变适应效应.
- 异甲酸脱酶 (IMDH) 自然使用尼古丁胺二核酸 (NAD),但可以通过工程来使用尼古丁胺二核酸 (NADP).
研究的目的:
- 描述IMDH中控制辅酶特异性的六种氨基酸的健康状况.
- 了解酶进化中的基因型-表型-适应性关系.
主要方法:
- 工程IMDH使用NADP而不是NAD.
- 分析中间酶变体,以评估添加剂和表观性贡献.
- 绘制基因型-表型-健康格局的地图.
主要成果:
- 个别的氨基酸变化对酶功能有增强性的贡献.
- 表观性相互作用主要影响酶的适应性,而不是功能.
- 尼古丁胺胺氨基二核酸 (NAD) 的利用代表了IMDH的全球最佳情况.
结论:
- 该研究为IMDH提供了详细的健身景观,说明了基因型-表型-健身关系.
- 这些发现支持了健身景观绘制在分子进化中的预测能力.
- 使用NAD被认为是IMDH功能最佳状态.
相关概念视频
Carbon Skeletons
Life on Earth is carbon-based, as all macromolecules that make up living organisms contain carbon atoms. All organic compounds have a carbon backbone. Each carbon atom is tetravalent and can bond with four other atoms, making it an extraordinarily flexible component of biological molecules. Because carbon’s valence electrons are stable, it rarely becomes an ion. As the carbon chain increases in length, structural modifications such as ring structures, double bonds, and branching side chains...
Conserved Binding Sites
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Structures of Carboxylic Acid Derivatives
Structure of Carboxylic Acid Derivatives
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the unhybridized p...
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the unhybridized p...
Conserved Binding Sites
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Structure of Amines
The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are illustrated in Figure...
Microbial Morphologies
Bacterial and archaeal cells exhibit remarkable diversity in shape and structure, critical in their adaptability and functionality. Among bacteria, the most commonly observed shapes include cocci and bacilli. Cocci are spherical and may exist singly or in groupings such as pairs (diplococci), chains (streptococci), clusters (staphylococci), or tetrads. Bacilli, in contrast, are rod-shaped and can also occur as single cells, in pairs, or chains, depending on their environmental and genetic...


