在酸盐还原酶中对2型铜的侧面NO协调进行建模:结构,能量和结合
Ingar H Wasbotten1, Abhik Ghosh
1Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway.
Journal of the American Chemical Society
|November 3, 2005
概括
密度功能理论 (DFT) 的计算在酸盐减少酶 (CuNIR) 中发现了新的铜-酸盐物种 ({CuNO}10和{CuNO}11). 这种{CuNO}11物种对CuNIR活跃点具有有利的能量和几何.
科学领域:
- 生物化学 生物化学
- 计算化学计算化学
- 酶的机制 酶的机制
背景情况:
- 缩酶 (NiR) 酶在循环中起着至关重要的作用.
- 2型铜位点与NiR酶活性有关.
- 了解铜-尼托基物种的协调化学对于阐明NiR机制至关重要.
研究的目的:
- 调查转移稳定的铜-尼托西尔物种的存在和特性.
- 为了确定在NiR中 (NO) 与铜的首选协调模式.
- 将计算模型与CuNIR中间体的实验晶体学数据进行比较.
主要方法:
- 使用密度函数理论 (DFT) 的计算.
- 模拟了10种{CuNO}和11种{CuNO}的转移性物种.
- 分析了能量有利性和几何参数.
主要成果:
- DFT计算证实了侧面{CuNO}10和{CuNO}11物种的存在.
- {CuNO}11物种对NO的协调表现出更有利的能量.
- {CuNO}11的几何参数更好地与CuNIR中间体的晶体学数据保持一致.
结论:
- 转移性{CuNO}10和{CuNO}11物种与CuNIR中的2型铜部位有关.
- 在 {CuNO}11 种类中,侧面NO 协调在能量方面受到青.
- 与{CuNO}10.11相比,{CuNO}11为CuNIR中间体提供了更好的结构模型.
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