在胆氧化酶中依赖氧气和温度的动态同位素效应:与环境增强的道化转移相关的可逆化物转移
1Department of Biology, Georgia State University, Atlanta, Georgia 30302-4098, USA.
Journal of the American Chemical Society
|December 15, 2005
概括
这项研究调查了胆氧化酶,揭示了氧度对酶动力学的影响. 脱胆研究表明,化物转移是通过量子道发生的,而不是通过经典的超越障碍机制.
科学领域:
- 生物化学 生物化学
- 酶动力学 酶动力学
- 生物有机化学 生物有机化学
背景情况:
- 胆氧化酶促进胆氧化为糖氨酸.
- 甲乙是这种反应中的中间体,使用氧气作为电子受体.
研究的目的:
- 为了研究氧气度和温度对动态同位素效应的影响,使用脱化胆.
- 为了阐明胆氧化酶对胆氧化中的化物转移机制.
主要方法:
- 使用1,2-[(2) H4]-胆进行动态同位素效应测量.
- 在不同氧度下分析pH依赖的动力参数 (kcat/Km,kcat).
- 温度依赖性研究以确定激活度.
主要成果:
- 动态同位素效应在低氧度 (<或 = 0.97 mM) 时依赖pH,这表明氧气调节了酶中间分离.
- 化物转移显示温度独立性和对预指数因子的显著同位素效应,表明量子道化.
- 类似的胆和脱胆的激活度支持量子力学化物转移机制.
结论:
- 氧气的可用性影响了胆氧化酶的催化途径.
- 胆氧化酶对胆氧化中的化物转移步骤是通过量子力学道进行的.
- 酶的活性部位预先组织,以促进化物道化,受到环境振动的最小影响.
相关概念视频
SN2 Reaction: Kinetics
Kinetic Studies and Significance
In a chemical reaction, a relationship exists between the concentration of reactants and the rate at which the reaction proceeds. The study to measure this relationship is known as the kinetics of a chemical reaction. Kinetic studies are used to deduce the rate law of a chemical reaction, which provides information about the species involved during the transition state of the rate-determining step. Thus, kinetic studies help to derive the mechanism of a reaction.
In a chemical reaction, a relationship exists between the concentration of reactants and the rate at which the reaction proceeds. The study to measure this relationship is known as the kinetics of a chemical reaction. Kinetic studies are used to deduce the rate law of a chemical reaction, which provides information about the species involved during the transition state of the rate-determining step. Thus, kinetic studies help to derive the mechanism of a reaction.
Introduction to Mechanisms of Enzyme Catalysis
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes a mild...
Cooperative Allosteric Transitions
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Regioselective Formation of Enolates
As depicted in the figure below, the unsymmetrical ketones can form two possible enolates: less substituted or more substituted enolates. Usually, the thermodynamic enolates are formed from the more substituted α-carbon atom, while the kinetic enolates are formed faster by deprotonation from the less substituted position. The thermodynamic enolates have lower energy, so they are more stable. But the energy required to form kinetic enolates is less.
Cooperative Allosteric Transitions
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Introduction to Mechanisms of Enzyme Catalysis
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes a mild...


