DNA中的超快速动态:在螺旋环的末端"磨"
Daniele Andreatta1, Sobhan Sen, J Luis Pérez Lustres
1Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, USA.
Journal of the American Chemical Society
|May 25, 2006
概括
研究人员使用氨酸102染料测量了DNA内的电场动态. 在DNA末端附近观察到的新的5ps放松时间表明螺旋迅速磨损.
科学领域:
- 分子生物物理学 分子生物物理学
- 摄影化学的使用.
- 基因动力学 基因动力学
背景情况:
- DNA 的电场动态对于它的功能至关重要.
- 之前使用库马林102记者的研究表明,放松动态分布广泛.
- 有着染料分子取代基对的寡核酸作为局部电场的探针.
研究的目的:
- 为了研究记者位置对DNA电场动态的影响.
- 描述一个寡核酸螺旋末端的放松过程.
- 为了确定与DNA末端动态相关的特定时间常数.
主要方法:
- 时间分辨率的辐射光谱在广泛的时间范围内 (40 fs 到 40 ns).
- 时间相关光子计数,光上转换和短暂吸收技术的组合.
- 使用素102的寡核酸作为对局部电场敏感的探针.
主要成果:
- 广泛分布的放松动态在记者靠近寡核酸末端时仍然存在.
- 发现了一种新的,独特的放松过程,时间常数为5ps.
- 这种5 psi的放松归因于DNA螺旋末端的快速磨损.
结论:
- 电场报告员的位置会影响观察到的动态.
- 在DNA末端的快速螺旋磨损引入了一个新的,明确的放松组件.
- 这些发现为DNA末端的动态行为提供了洞察力.
相关概念视频
The DNA Replication Fork
An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork. Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...
DNA Topoisomerases
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
Fixing Double-strand Breaks
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
Homologous Recombination
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
The DNA Replication Fork
An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork. Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...
Fixing Double-strand Breaks
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...


