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在被埋藏的极性相互作用驱动的四个α螺旋束中设计的与原生结构类似
Ronald L Koder1, Kathleen G Valentine, Jose Cerda
1The Johnson Research Foundation and the Department of Biochemistry and Biophysics, The University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059, USA.
Journal of the American Chemical Society
|November 9, 2006
概括
蛋白质设计通过使用极性相互作用来简化结构特异性. 研究人员证明了蛋白质结构的联体受控切换,挑战了传统的设计原则.
科学领域:
- 蛋白质工程是一种蛋白质工程.
- 结构生物学是结构生物学.
- 生物化学 生物化学
背景情况:
- 螺旋束蛋白质依赖于特定的包装来构建它们的结构.
- 传统的蛋白质设计往往侧重于疏水的互补性 ("孔中的旋").
研究的目的:
- 调查极性相互作用是否可以驱动螺旋束蛋白质中的结构特异性.
- 为了证明连接体对蛋白质结构的诱导控制.
- 探索简化的蛋白质设计策略.
主要方法:
- 设计具有特定极相互作用的螺旋束蛋白质.
- 使用不同形状的胺结合因子来探测蛋白质核心.
- 通过绑定结合因子来诱导结构变化,这些合作因子会结合一个或两个丁连接体.
主要成果:
- 每个螺旋的单个内部极相互作用足以赋予结构特异性.
- 结构特异性是独立于传统的"孔中的旋"包装.
- 蛋白质结构可以通过辅因子结合反向地打开和关闭.
- 蛋白质的设计没有计算建模,简化了设计过程.
结论:
- 极地相互作用是螺旋束结构特异性的关键决定因素.
- 干结合提供了对蛋白质结构的广泛控制.
- 蛋白质设计可以通过更简单的,基于极性相互作用的策略来实现,绕过复杂的疏水性包装要求.
- 这项工作对自组装分子系统和蛋白质工程有影响.
相关概念视频
Protein Organization
Overview
Generation of Straight or Branched Actin Filaments
The straight or branched structure formation of actin filaments is controlled by nucleating proteins such as the formins and Arp2/3 complex. Formin-mediated assembly results in straight filaments, whereas Arp2/3 protein complex-mediated assembly results in branched actin filaments.
Arp2/3 Complex
Arp2/3 complex is a seven-subunit complex consisting of two proteins similar to actin- Arp2 and Arp3, and five other subunits that help keep Arp2 and Arp3 inactive. When required, the complex is...
Arp2/3 Complex
Arp2/3 complex is a seven-subunit complex consisting of two proteins similar to actin- Arp2 and Arp3, and five other subunits that help keep Arp2 and Arp3 inactive. When required, the complex is...
Formation of Higher-order Actin Filaments
The polymerization of G-actin monomers into filamentous F-actin is a multi-step process. Once the F-actins are formed, they can bundle together in different arrangements to form higher-order networks and regulate cellular functions. Common examples include the formation of lamellipodia and filopodia at the cell's leading edge by actin reorganization in a migrating cell. The microvilli on the brush border epithelial cells are also formed through the F-actin network.
The high-order actin networks...
The high-order actin networks...
The Structure of Intermediate Filaments
The intermediate filaments are one of three widely studied cytoskeletal filaments. They are so named as their diameter (10 nm) is in between that of microfilaments (7 nm) and the microtubules (25 nm). These filaments are highly stable and can remain intact when exposed to high salt concentrations and detergents. These filaments are responsible for providing stability and mechanical support to the cells. They also help in cell adhesion and maintaining tissue integrity.
Intermediate filaments...
Intermediate filaments...
Formation of Intermediate Filaments
Intermediate filaments are cytoskeletal proteins with higher tensile strength and flexibility than microfilaments and microtubules. Unlike the other two cytoskeletal proteins, intermediate filament formation lacks the enzymatic activity to hydrolyze nucleotides like ATP and GTP to generate energy for polymerization. Therefore, the formation of intermediate filaments is multistep self-assembly. The involvement of any accessory proteins in intermediate filament formation has not yet been reported.
Protein Organization
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
The primary structure of a protein is its amino acid sequence.

