用固态NMR光谱学对域互换蛋白质的折叠中间体进行表征
Manuel Etzkorn1, Anja Böckmann, François Penin
1Department of NMR-Based Structural Biology and Electron Microscopy, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Journal of the American Chemical Society
|January 4, 2007
概括
二维固态NMR显示,域交换蛋白Crh的不溶性折叠状态保留了显著的本地二次结构. 该技术监测蛋白质聚合物的缓慢分子折叠事件,显示温度升高时的结构变化.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 生物物理学的生物物理.
背景情况:
- 像Crh这样的域互换蛋白可以形成不溶性聚合物.
- 了解这些聚合物的结构和动态对于疾病研究至关重要.
研究的目的:
- 研究域互换蛋白Crh.不溶性折叠状态的结构和动态.
- 使用固态NMR实时监测形状变化.
主要方法:
- 两维固态NMR光谱学. 二维固态NMR光谱学.
- 电子显微镜. 电子显微镜.
- 在同电点 (pI) 上的蛋白质沉.
主要成果:
- 与结晶状态相比,crh pI沉物显示出增加的分子流动性.
- 一个部分展开的中间状态在13K温度升高后形成,导致富含β片的球形聚合物.
- 三个α螺旋中的两个重新排列成聚合物,而一个仍然完好无损.
- 域互换并没有保存到聚合形式,由链区域的化学转移变化表明.
结论:
- 域互换蛋白质的蛋白质聚合物可以保留大量的本地二次结构.
- 固态NMR对于监测蛋白质聚合物的缓慢分子折叠事件是有效的.
相关概念视频
¹H NMR: Complex Splitting
A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied first.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied first.
¹H NMR: Interpreting Distorted and Overlapping Signals
Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
Two-Dimensional (2D) NMR: Overview
The 1D NMR spectrum of large and complex molecules like natural products has complicated splitting patterns and overlapping signals, which can be easily interpreted using 2-dimensional (2D) NMR. Unlike 1D NMR, 2D NMR has two frequency axes that provide the coupling information between the nucleus A and nucleus B in a molecule. The process from which 2D spectra are obtained has four steps.
The first step is the preparation period, during which nucleus A is excited with a radiofrequency pulse.
The first step is the preparation period, during which nucleus A is excited with a radiofrequency pulse.
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR
The axial and equatorial protons in cyclohexane can be distinguished by performing a variable-temperature NMR experiment. In this process, except for one proton, the remaining eleven protons are replaced by deuterium. The deuterium substitution avoids the possible peak splitting caused by the spin-spin coupling between the adjacent protons. The remaining proton flips between the axial and equatorial positions.
Applications Of NMR In Biology
Nuclear magnetic resonance (NMR) spectroscopy is a very valuable analytical technique for researchers. It has been used for more than 50 years as an analytical tool. F. Bloch and E. Purcell formulated NMR in 1946 and won the 1952 Nobel Prize in Physics for their work. Biological macromolecules such as proteins, nucleic acids, lipids, and organic molecules including pharmaceutical compounds, can be studied using this versatile tool that exploits the magnetic properties of certain nuclei.
The...
The...


