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Preparation of Amines: Alkylation of Ammonia and Amines
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Alkylation is one of the methods used to prepare amines. Direct alkylation of ammonia or a primary amine with an alkyl halide gives polyalkylated amines along with a quaternary ammonium salt through successive SN2 reactions. This process of making the quaternary salt through the direct alkylation method is called exhaustive alkylation.
Each alkylation step makes the nitrogen center more nucleophilic, which triggers successive alkylations until a quaternary ammonium salt is formed. Considering...
Each alkylation step makes the nitrogen center more nucleophilic, which triggers successive alkylations until a quaternary ammonium salt is formed. Considering...
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Pore Transport and Ion-Pair Transport
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Pore transport and ion-pair formation are critical mechanisms for the absorption and distribution of drugs in the body.
Pore transport, also known as convective transport, is a process where small molecules like urea, water, and sugars rapidly cross cell membranes as though there were channels or pores in the membrane. Although direct microscopic evidence is limited but the concept of pores or channels is widely accepted based on physiological evidence. Despite the lack of direct...
Pore transport, also known as convective transport, is a process where small molecules like urea, water, and sugars rapidly cross cell membranes as though there were channels or pores in the membrane. Although direct microscopic evidence is limited but the concept of pores or channels is widely accepted based on physiological evidence. Despite the lack of direct...
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Reduction of Alkynes to trans-Alkenes: Sodium in Liquid Ammonia
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Alkynes can be reduced to trans-alkenes using sodium or lithium in liquid ammonia. The reaction, known as dissolving metal reduction, proceeds with an anti addition of hydrogen across the carbon–carbon triple bond to form the trans product. Since ammonia exists as a gas (bp = −33°C) at room temperature, the reaction is carried out at low temperatures using a mixture of dry ice (sublimes at −78°C) and acetone.
When dissolved in liquid ammonia, an alkali metal, such as sodium,...
When dissolved in liquid ammonia, an alkali metal, such as sodium,...
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Facilitated Transport
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The chemical and physical properties of plasma membranes cause them to be selectively permeable. Since plasma membranes have both hydrophobic and hydrophilic regions, substances need to be able to transverse both regions. The hydrophobic area of membranes repels substances such as charged ions. Therefore, such substances need special membrane proteins to cross a membrane successfully. In facilitated transport, also known as facilitated diffusion, molecules and ions travel across a...
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Short-distance Transport of Resources
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Short-distance transport refers to transport that occurs over a distance of just 2-3 cells, crossing the plasma membrane in the process. Small uncharged molecules, such as oxygen, carbon dioxide, and water, can diffuse across the plasma membrane on their own. In contrast, ions and larger molecules require the assistance of transport proteins due to their charge or size. Transport across membranes also occurs within individual cells, playing a variety of essential roles for the plant as a whole.
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Electron Transport Chains
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The final stage of cellular respiration is oxidative phosphorylation that consists of two steps: the electron transport chain and chemiosmosis. The electron transport chain is a set of proteins found in the inner mitochondrial membrane in eukaryotic cells. Its primary function is to establish a proton gradient that can be used during chemiosmosis to produce ATP and generate electron carriers, such as NAD+ and FAD, that are used in glycolysis and the citric acid cycle.
The ETC is comprised of...
The ETC is comprised of...
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氨运输蛋白AmtB的疏水孔中的氨/氨的质子状态.
Hiroshi Ishikita1, Ernst-Walter Knapp
1Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, USA. hzi1@usc.edu
Journal of the American Chemical Society
|February 1, 2007
概括
氨运输 (Amt) 蛋白AmtB有四个结合点. 计算显示氨 (NH3) 占据了大多数位置,而氨 (NH4+) 仅在一个进入位置,由Ser219.9促进.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 计算生物学 计算生物学
背景情况:
- 氨运输 (Amt) 蛋白AmtB促进氨/氨 (NH3/NH4+) 通过细胞膜的运动.
- 了解AmtB孔内NH3/NH4+的质子化状态对于阐明运输机制至关重要.
研究的目的:
- 为了确定氨/ (NH3/NH4+) 在AmtB蛋白孔内的已识别的结合点的质子化状态.
- 用Poisson-Boltzmann方程计算这些结合位点的pK (a) 值.
主要方法:
- 在1.4安格斯特罗姆分辨率下对AmtB的晶体结构分析.
- Poisson-Boltzmann方程用于计算NH3/NH4+结合点的pK (a) 值.
- 分析NH3 / NH4 +,可定位残留物 (His168,His318) 和Ser219.19之间的相互作用.
主要成果:
- 在AmtB孔内发现了四个NH3/NH4+结合点.
- 由于溶解效应,NH3在三个地点是主要的物种,排除了阴离子-pi相互作用.
- 孔入口的Am1位点与NH4+结合,由Ser219和附近的水稳定,pK(a) 约为1.
结论:
- 氨酸219在Am1位点稳定NH4+并随后促进其去质子化为NH3进行运输方面发挥着至关重要的作用.
- 建议Ser219的翻转/翻转机制在氨运输过程中对NH4+的结合和去质子化至关重要.
- 该研究澄清了AmtB内的氨/氨的质子化状态,为膜传输机制提供了洞察力.

