一个基于序列的SNP的8.27万个SNP的变异地图在杂交小鼠菌株中
Kelly A Frazer1, Eleazar Eskin, Hyun Min Kang
1Perlegen Sciences, 2021 Stierlin Court, Mountain View, California 94043, USA. frazer.kelly@scrippshealth.org
Nature
|July 31, 2007
概括
研究人员绘制了实验室小鼠的遗传变异图,确定了数百万个单核酸多态 (SNP). 这张详细的小鼠基因组图增强了对小鼠进化和菌株差异的理解.
科学领域:
- 基因组学就是基因组学.
- 进化生物学 进化生物学
- 进行比较基因组学.
背景情况:
- 实验室老鼠的综合遗传变异地图对于理解进化史至关重要.
- 对于遗传研究来说,研究跨小鼠菌株的基因型和表型变异之间的联系是必不可少的.
研究的目的:
- 为了创建实验室小鼠基因组中遗传变异的密集地图.
- 为了深入了解Mus musculus的进化历史.
- 提高对不同小鼠菌株的基因型-表型关系的理解.
主要方法:
- 重组四种野生来源和11种古典老鼠菌株的基因组.
- 在整个基因组中识别高质量的单核酸多态 (SNP).
- 使用已识别的SNP,生成全基因组的单元型图.
主要成果:
- 确定了827万个高质量的单核酸多态 (SNP).
- 创建了一个全基因组的单双类型地图,有40,898个细分.
- 确定了Mus musculus亚种对古典菌株的遗传贡献,其中M. m. domesticus是最重要的.
结论:
- 密集的SNP地图为小鼠基因组学和进化研究提供了宝贵的资源.
- 了解亚种贡献有助于解释基因型-表型相关性.
- 这些数据有助于在其他老鼠菌株中归纳基因型,从而使变异更完整.
相关概念视频
Incomplete Dominance
19.0K
Gregor Mendel's work (1822 - 1884) was primarily focused on pea plants. Through his initial experiments, he determined that every gene in a diploid cell has two variants called alleles inherited from each parent. He suggested that amongst these two alleles, one allele is dominant in character and the other recessive. The combination of alleles determines the phenotype of a gene in an organism.
19.0K
Multi-species Conserved Sequences
3.3K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.3K
Comparing Copy Number Variations and SNPs
11.6K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
11.6K
Single Nucleotide Polymorphisms-SNPs
14.6K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
14.6K
Genetic Variation
1.7K
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles,...
Genes exist in different versions called alleles,...
1.7K


