在相关的酵母物种中转录因子结合部位的分歧
Anthony R Borneman1, Tara A Gianoulis, Zhengdong D Zhang
1Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA.
概括
酵母物种之间的基因调节差异揭示了转录因子结合部位的快速演变. 这种分歧明显超过了基因本身的变化,推动了物种进化.
科学领域:
- 进化生物学是进化的生物学.
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
背景情况:
- 了解物种间基因调节是解释表型多样性和进化的关键.
- 转录因子 (TF) 在基因调节中起着至关重要的作用.
研究的目的:
- 研究酵母物种之间转录因子结合点的分歧.
- 确定TF结合点进化在物种分歧中的作用.
主要方法:
- 使用染色体免疫沉 (ChIP),然后进行DNA微阵列分析.
- 在Saccharomyces cerevisiae,S. mikatae和S. bayanus中分析了伪球体调节剂Ste12和Tec1的结合部位.
主要成果:
- 大多数Ste12和Tec1结合点在研究的酵母物种之间存在分歧.
- 结合点的分歧显著超过了类间变异在orthologous基因.
- 一个Ste12目标的子集在S. mikatae和S. bayanus中具有独特的结合性,这表明路径专业化.
结论:
- 转录因子结合部位的进化速度要快得多,远远超过基因内容.
- 通过TF结合来调节基因的分歧是物种之间的进化分歧的主要驱动因素.
更多相关视频
相关概念视频
Gene Conversion
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
Conservative Site-specific Recombination and Phase Variation
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
Bacterial RNA Polymerase
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...
General Transcription Factors
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
Gene Conversion
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...


