驱动基因共同表达的转录元件的功能架构和演变
Christopher D Brown1, David S Johnson, Arend Sidow
1Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
概括
调查控制Ciona基因协同表达的cis-regulatory元素显示,虽然个体动机活性有所变化,但正统的动机被保留. 进化约束塑造了这些调节元素,影响了基因调节.
科学领域:
- 发育生物学 发展生物学
- 基因组学就是基因组学.
- 进化生物学 进化生物学
背景情况:
- 相互作用的基因产品的转录共同表达对于复杂的分子过程至关重要.
- 调节共表达的 cis 调节元件的功能和演变尚未得到充分理解.
研究的目的:
- 调查cis调节元件及其组成动机的活性和进化约束,这些动机驱动Ciona肌肉基因的共同表达.
主要方法:
- 控制Ciona肌肉基因共同表达的19个调节元素的突变.
- 定量估计77个组成动机的cis-regulatory活动.
- 在不同共同调节的基因中对正义基因的比较分析.
主要成果:
- 个体动图活动显示在元素和动图类型中和之间存在广泛的变化.
- 正义的动机活动在整个进化时间内受到强烈的约束.
- 在调节不同共同表达的基因的元素中,动机的排列,类型和活性显著不同.
结论:
- 管理 cis-regulatory 功能的语法规则是灵活的,但一旦建立起来,就会变得具有进化上的约束.
- 了解基因动态是解读复杂基因调节和进化的关键.
相关概念视频
Regulation of Expression Occurs at Multiple Steps
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Cooperative Binding of Transcription Regulators
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form dimers that...
Regulation of Expression Occurs at Multiple Steps
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Cooperative Binding of Transcription Regulators
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form dimers that...
Structure of a Gene
A gene is the fundamental unit of heredity. Every individual has two copies of each gene, one inherited from each parent. Although most people contain the same genes, there is a small fraction that is slightly different amongst people. A gene with a small difference in its sequence of DNA bases forms different alleles, contributing to different phenotypes.
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...
Regulation of Expression at Multiple Steps
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the addition of a...


