对横向基因转移障碍的全基因组实验性确定
Rotem Sorek1, Yiwen Zhu, Christopher J Creevey
1Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.
概括
水平基因转移 (HGT) 在微生物进化中至关重要. 实验数据显示,基因毒性和在宿主中增加的基因剂量,如大肠杆菌,通常会在整个生命中抑制HGT.
科学领域:
- 微生物学 微生物学
- 遗传学 是一个遗传学.
- 分子生物学分子生物学
背景情况:
- 水平基因转移 (HGT) 促进了微生物中的基因交换.
- 以前的研究主要依赖于计算序列分析.
- 关于HGT障碍物的实验数据很少.
研究的目的:
- 实验性地研究HGT对大肠杆菌的障碍物.
- 为了识别那些始终未能在原核生物之间转移的基因.
- 阐明转移抑制背后的机制.
主要方法:
- 试图将来自79个 prokaryotic 基因组的 246,045 个基因转移到 E. coli.
- 对基因转移失败的分析.
- 将编码区域置于可诱导的促进体下,以研究抑制机制.
主要成果:
- 鉴定出了持续未能转移的特定基因.
- 宿主毒性是基因转移的重要障碍,无论基因来源如何.
- 增加的基因剂量和基因表达成为转移失败的主要原因.
结论:
- 实验证据强调了毒性和基因剂量作为HGT的关键抑制剂.
- 这些发现很可能可以在细菌和考古学领域进行概括.
- 该研究提供了对HGT限制的关键实验见解.
相关概念视频
Horizontal Gene Transfer
Horizontal gene transfer (HGT) is a process where genetic material moves between organisms within the same generation, unlike vertical gene transfer, which occurs from parent to offspring. HGT plays a crucial role in microbial evolution, adaptation, and survival, particularly in shared environments like the human gut.Mobile genetic elements such as plasmids, prophages, integrons, insertion sequences, and transposons facilitate this process. HGT occurs through three primary mechanisms:...
Types of Genetic Transfer Between Organisms
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.
Types of Genetic Transfer Between Organisms
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.
Transduction
Among the three main modes of HGT—transformation, conjugation, and transduction—transduction is unique in that it is mediated by bacteriophages, or bacterial viruses.Transduction occurs in two ways. Generalized transduction occurs during the lytic cycle of a bacteriophage infection. In this process, bacteriophages infect bacterial cells, replicate within them, and ultimately cause cell lysis, releasing newly assembled virions. Occasionally, random fragments of the bacterial genome are...
Conjugation
Conjugation is a form of horizontal gene transfer that primarily occurs in bacteria and some archaea, promoting genetic diversity and adaptation. Bacteria can acquire resistance genes through conjugative plasmids, allowing them to survive antibiotic treatments that would otherwise be lethal. This process involves direct contact between cells through specialized structures such as the sex pilus and is mediated by conjugative plasmids, including the F (fertility) factor.Conjugation requires...
Evolution of Microbial Genome
Microbial genome evolution is a highly dynamic process shaped by continual gene gain and loss across species and strains. This genomic flexibility allows microorganisms to adapt rapidly to environmental pressures and interactions with other organisms. Central to understanding this diversity is the distinction between the core and pan genomes.The core genome comprises the genes shared by all sampled strains of a species, representing essential functions needed for fundamental cellular processes.


