混合序列B-DNA的链入侵由与阿克里丁结合的胺核酸 (-PNA) 发生
Srinivas Rapireddy1, Gaofei He, Subhadeep Roy
1Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, USA.
Journal of the American Chemical Society
|November 22, 2007
概括
具有亚克里丁部分的形态预先组织的-核酸 (gamma-PNA) 可以侵入混合序列B-DNA. 这一突破使得使用沃森-克里克基基配对原理对双链DNA进行序列特定的识别.
科学领域:
- 合成化学 合成化学
- 分子生物学分子生物学
- 生物技术是生物技术.
背景情况:
- 核酸 (PNA) 模仿DNA/RNA,并通过沃森-克里克配对结合目标.
- 目前的PNA由于结合能量不足而难以结合混合序列双链B-DNA.
研究的目的:
- 开发一种能够对混合序列B-DNA进行序列特定识别的PNA变体.
- 为了证明修改后的PNA侵入双链B-DNA.
主要方法:
- 使用结构预先组织的玛核酸 (gamma-PNA).
- 一个阿克里丁部分与玛-PNA的C端被共价连接.
- 研究了对混合序列B-DNA的特定序列结合.
主要成果:
- 有形预先组织的玛-PNA与一小部分阿克里丁成功侵入混合序列B-DNA.
- 通过直接的沃森-克里克基配对来进行识别.
- 证明了对双链DNA目标的特定序列结合.
结论:
- 修改的玛-PNA可以克服标准PNA在双链DNA识别方面的局限性.
- 单链DNA/RNA识别的既定原则适用于使用这些修饰PNAs的双链B-DNA.
相关概念视频
Maxam-Gilbert Sequencing
In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
The...
Challenges of the Maxam-Gilbert Method
The...
Single-Strand DNA Binding Proteins
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
Homologous Recombination
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
piRNA - Piwi-interacting RNAs
PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
Sanger Sequencing
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
Next-generation Sequencing
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.


