在欧洲人群中比在非洲人群中具有相对更有害的遗传变异
Kirk E Lohmueller1, Amit R Indap, Steffen Schmidt
1Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.
Nature
|February 22, 2008
概括
非洲裔美国人比欧洲裔美国人携带更多有害突变,在所有功能单核酸多态 (SNP) 类型中具有更高的异构性. 欧洲裔美国人表现出更多的同卵性衍生基因,可能是由于过去的人口瓶.
科学领域:
- 人类遗传学 人类遗传学
- 进化生物学是进化的生物学.
- 人口遗传学 人口遗传学
背景情况:
- 在人类基因组中量化有害突变对于进化和医学遗传学至关重要.
- 了解人口之间的遗传变异差异有助于理解疾病易感性和进化史.
研究的目的:
- 在非洲裔美国人 (AA) 和欧洲裔美国人 (EA) 个体中估计功能性后果单核酸多态 (SNP) 的数量.
- 为了比较AA和EA群体之间的各种SNP类别的核酸异构性和等位基同构性水平.
主要方法:
- 结合了基于PCR的外因子再测序的全基因组多态数据.
- 利用哺乳动物物种之间的比较基因组数据.
- 纳入蛋白质结构预测,以评估SNP的功能后果.
主要成果:
- 在所有功能性SNP类别 (同义词,非同义词,良性,可能有害,可能有害) 中,AA表现出明显高于EA的核酸异构性.
- 与AAs相比,EAs在同名,非同名和"可能有害"的SNP中具有更多的同位素衍生的等位基因.
- 非同义SNP和"可能有害"SNP的比例在EA样本中明显高于AA样本.
结论:
- 非洲裔美国人携带的有害突变负担高于欧洲裔美国人,与非洲人口的整体核酸变异高相一致.
- 欧洲人中有害等位基因的过多比例表明,过去的人口瓶事件可能与非洲的移民有关.
相关概念视频
What is Population Genetics?
A population is composed of members of the same species that simultaneously live and interact in the same area. When individuals in a population breed, they pass down their genes to their offspring. Many of these genes are polymorphic, meaning that they occur in multiple variants. Such variations of a gene are referred to as alleles. The collective set of all the alleles within a population is known as the gene pool.
Mutation, Gene Flow, and Genetic Drift
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
Genetic Drift
Natural selection—probably the most well-known evolutionary mechanism—increases the prevalence of traits that enhance survival and reproduction. However, evolution does not merely propagate favorable traits, nor does it always benefit populations.
Gene Flow
Gene flow is the transfer of genes among populations, resulting from either the dispersal of gametes or from the migration of individuals.
Comparing Copy Number Variations and SNPs
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Principles of Pharmacogenetics: Types of Genetic Variants
The human genome is over 99.9% identical between individuals, yet genetic differences exist at millions of bases. The human genome contains approximately 3 million variant positions per individual, many of which are heterozygous, contributing to genetic diversity and individual traits. Genetic variations include single-nucleotide polymorphisms (SNPs), insertions, deletions, and copy number variations (CNVs).SNPs, the most common variation, involve single-base changes in DNA. These can be...


