人类基因组中核体定位的动态调节
Dustin E Schones1, Kairong Cui, Suresh Cuddapah
1Laboratory of Molecular Immunology, The National Heart, Lung and Blood Institute, NIH, Bethesda, MD 20892, USA.
Cell
|March 11, 2008
概括
人类T细胞中全基因组核细胞映射揭示了转录的动态调节. 核细胞的定位与RNA聚合酶II结合以及基因激活和沉默过程中的变化相关.
科学领域:
- 表观遗传学和基因调控
- 分子生物学分子生物学
- 人类基因组学 人类基因组学
背景情况:
- 核细胞的定位对于调节基因转录至关重要.
- 之前在人类中进行的核细胞图谱研究仅限于特定的基因组区域.
研究的目的:
- 为了生成人类CD4+T细胞中核体位置的全面,全基因组范围的地图.
- 为了研究细胞激活和基因表达变化期间核细胞景观的动态调节.
主要方法:
- 通过使用Solexa高通量测序技术,直接测序核细胞末端.
- 与转录开始地点相对的核细胞分相的分析.
- 核细胞组织在休息状态与激活的T细胞之间的比较.
主要成果:
- 核细胞分相与RNA聚合酶II结合直接相关.
- 在活跃基因与静默基因中,在转录起始点下游的第一个核细胞体中观察到核细胞体的差异定位.
- T细胞受体信号触发了促进剂和增强剂中广泛的核细胞重组.
- 有证据表明,含有H2A.Z和修饰核细胞的优先损失来自-1位置.
结论:
- 提供了对人类基因组核细胞的综合视图.
- 证明了对细胞信号和转录状态的反应中核细胞定位的动态调节.
- 突出了核细胞重组在控制基因激活和抑制中的作用.
相关概念视频
Nucleosome Remodeling
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Chromatin Position Affects Gene Expression
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the timing and level of...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the timing and level of...
Duplication of Chromatin Structure
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
The Nucleosome Core Particle
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...


