一个由逆转移素介导的基因重复是番茄果的形态变异的基础
Han Xiao1, Ning Jiang, Erin Schaffner
1Department of Horticulture and Crop Science, Ohio State University/Ohio Agricultural Research and Development Center, Wooster, OH 44691, USA.
概括
一个涉及逆转子体的基因重复事件产生了SUN基因,导致长长的番茄果形状. 这突出了反转移子作为植物基因组进化和表型变化的驱动因素.
科学领域:
- 植物遗传学 植物遗传学
- 分子生物学分子生物学
- 进化生物学是进化的生物学.
背景情况:
- 在蔬菜作物中,番茄果实形状的多样性很重要.
- 太阳基因是番茄中长长的水果形态的关键调节者.
研究的目的:
- 为了识别和表征负责番茄果实形状的SUN基因.
- 阐明了水果形态的进化背后的基因组机制.
主要方法:
- 位置克隆的太阳基因.
- 对基因复制事件的分析.
- 对逆转移子活性的研究.
- 基因表达分析.
主要成果:
- 阳光基因编码了一个含有IQ67域的蛋白质.
- 24.7千基基因复制事件,由骑手逆转移子介导,创造了SUN位点.
- 阳光的新基因组背景导致基因表达的增加和长长的水果形状.
结论:
- 逆转移子可以驱动植物中的基因重复和显著的表型进化.
- 太阳基因复制为了解基因组重组如何影响作物特征提供了一个模型.
相关概念视频
Gene Duplication and Divergence
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
Overview of Transposition and Recombination
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
LTR Retrotransposons
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
DNA-only Transposons
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
The donor site from where the transposon is excised is either degraded or...
Transposons
Transposons, or "jumping genes," are small mobile genetic elements (MGEs) that range from 700 to 40,000 base pairs in length. They are found in all organisms and can move within the same chromosome or transfer to different chromosomes. In some cases, transposons can also jump between different host DNA molecules, such as plasmids or viruses, contributing to genetic variability.Barbara McClintock first discovered these mobile genetic elements in the 1940s while studying maize genetics, and she...
Non-LTR Retrotransposons
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...


