应用力揭示了转录终止的机械和能量细节
Matthew H Larson1, William J Greenleaf, Robert Landick
1Biophysics Program, Stanford University, Stanford, CA 94305, USA.
Cell
|March 25, 2008
概括
细菌转录终止依赖于RNA发针和富含U的序列. 不同的终结者使用不同的机制,如超转位或混合剪切,以破坏延长复合体的稳定,并确保基因调节.
科学领域:
- 分子生物学分子生物学
- 生物物理学的生物物理.
- 遗传学 遗传学 是一个
背景情况:
- 细菌转录终止对于基因调节至关重要.
- 它涉及特定的RNA序列:一个富含GC的发针,其后是一个富含U的通道.
- 延伸复合体 (EC) 必须被破坏稳定才能发生终止.
研究的目的:
- 研究细菌RNA聚合酶 (RNAP) 终结器破坏EC稳定的机制.
- 为了区分RNA发针和富含U的区域在终结中的作用.
- 开发一个终结器函数的定量模型.
主要方法:
- 用单分子技术研究了三个代表性的终结器 (his,t500,tR2).
- 机械负荷被应用于偏差转移和评估依赖力动力学.
- 张力应用于孤立的U通道,以研究RNA:DNA混合动力学.
主要成果:
- 终止效率 (TE) 在"his"和"tR2"终止器的负载上不受影响.
- "t500"终端显示了取决于力力的动力学和TE,表明了向前转移机制.
- 确定U-tract剪切和发针底部配对动态是关键的破坏稳定的因素.
- 不同的终结器使用不同的机制,包括超转位和混合剪切.
结论:
- 细菌转录终结涉及不同的机制,取决于终结器序列组成.
- RNA:DNA混合剪切和发针稳定性对于破坏欧洲共同体的稳定性至关重要.
- 定量模型可以预测终结者和突变变异的行为,进步我们对基因调节的理解.
相关概念视频
Transcription Attenuation in Prokaryotes
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
Bacterial Transcription
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription in Prokaryotes
Transcription is a highly regulated process that converts genetic information into RNA molecules. The transcription cycle is divided into three key stages: initiation, elongation, and termination, each driven by specific molecular mechanisms.Initiation of TranscriptionIn bacteria, transcription begins when the RNA polymerase core enzyme associates with a sigma factor to form a holoenzyme. For example, the E. coli sigma factor called σ70 forms a holoenzyme, which recognizes the -10 (Pribnow box)...
Transcription Elongation Factors
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA into a...
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA into a...
Transcription Elongation Factors
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA into a...
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA into a...
Transcription Initiation
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...


