宏分子拥挤对内在无序蛋白质和球状蛋白质的不同动态影响:对细胞内NMR光谱学的影响
Conggang Li1, Lisa M Charlton, Asha Lakkavaram
1Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.
Journal of the American Chemical Society
|April 19, 2008
概括
细胞内NMR可以揭示蛋白质结构和动态. 然而,像α-synuclein这样的无序蛋白质是可检测的,而像chymotrypsin抑制剂2这样的球状蛋白质不是由于细胞粘度效应造成的.
科学领域:
- 生物物理学的生物物理.
- 结构生物学 结构生物学
- 细胞NMR光谱学 细胞NMR光谱学
背景情况:
- 细胞内蛋白质度高达300g/L.
- 细胞内NMR提供了对活细胞内的蛋白质结构和动态的原子分辨率见解.
- 了解细胞环境如何影响蛋白质的行为至关重要.
研究的目的:
- 调查使用细胞内NMR研究蛋白质结构和动态的可行性.
- 为了比较一个内在无序的蛋白质 (α-synuclein) 和一个球状蛋白质 (chymotrypsin 抑制剂 2) 的细胞内检测能力.
主要方法:
- 使用细胞内核磁共振 (NMR) 光谱学.
- 检查了α-synuclein (原生展开) 和基米素抑制剂2 (球体).
- 使用阿尔金酸盐封装以减轻细胞泄漏.
主要成果:
- 对α-synuclein获得了高分辨率的细胞内NMR光谱.
- 化学素抑制剂2从细胞中出现泄漏,使其无法检测到.
- 即使经过稳定,细胞内化学素抑制剂2仍然无法检测到.
- 实验室研究表明,对细胞粘度的不同动态反应.
结论:
- 细胞内核磁共振 (NMR) 是有效的研究内在无序的蛋白质,如α-synuclein.
- 球状蛋白质,如基摩素抑制剂2,由于泄漏和动态,对细胞内NMR检测构成挑战.
- 细胞粘度显著影响蛋白质的检测能力,基于它们的结构障碍.
相关概念视频
Intrinsically Disordered Proteins
Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
Protein Dynamics in Living Cells
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
¹H NMR: Interpreting Distorted and Overlapping Signals
Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...


