在重新连接的细菌基因网络中,可变性和层次结构
Mark Isalan1, Caroline Lemerle, Konstantinos Michalodimitrakis
1EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain. isalan@crg.es
Nature
|April 19, 2008
概括
添加新的细菌遗传链接通常是可以容忍的,甚至可以提高生存率. 这项研究探讨了新的生物网络连接如何影响细菌进化和健康.
科学领域:
- 系统生物学 系统生物学
- 进化遗传学的进化遗传学
- 分子生物学分子生物学
背景情况:
- 基因组进化是由基因重复和漂移形成的.
- 之前的研究重点是基因淘汰/过度表达,而不是网络链接添加.
- 新生物网络连接对进化能力的影响还未得到充分研究.
研究的目的:
- 通过引入新的链接来研究生物网络的进化性.
- 评估新型网络配置的细菌耐受性和适应性后果.
主要方法:
- 在大肠杆菌中构建了598个促进子基因重组.
- 将这些新型网络引入了野生类型的遗传背景.
- 分析了网络耐受性,生长效应和在选择压力下生存.
主要成果:
- 大约95%的新建网络被大肠杆菌容忍.
- 很少有新的网络显著改变了细菌生长率.
- 表达水平与该因子在野生类型网络层次结构中的位置相关.
- 某些新型网络在各种选择压力下,比野生类型提供了一致的生存优势.
结论:
- 在生物网络中引入新的链接很少对细菌进化造成损害.
- 新的网络连接可以提供显著的健身优势.
- 网络的可变性是强大的,新的链接有助于适应.
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