自然选择塑造了Drosophila melanogaster中复制数多态的全基因组模式
J J Emerson1, Margarida Cardoso-Moreira, Justin O Borevitz
1Department of Ecology and Evolution, University of Chicago, Chicago, IL 60637, USA. jje@uchicago.edu
概括
自然选择塑造了果的拷贝数突变. 净化选择强烈影响删除位置,而积极选择则有利于毒素反应基因中的重复.
科学领域:
- 基因组学就是基因组学.
- 进化生物学 进化生物学
- 人口遗传学 人口遗传学
背景情况:
- 自然选择对拷贝数突变的演变的影响尚未得到充分理解.
- 复制数多态 (CNP) 是具有重大进化影响的遗传变异来源.
研究的目的:
- 研究自然选择在塑造基因组分布和拷贝数突变早期演变中的作用.
- 创建Drosophila melanogaster中CNP的高分辨率地图并分析它们的进化动态.
主要方法:
- 利用高密度,全基因组片阵列进行全面的基因组分析.
- 在整个基因组中推断出大量的独立副本数多态 (CNP).
主要成果:
- 鉴定了2658个独立的CNP,其中56%的基因重叠.
- 在高频繁重复中观察到积极选择的证据,特别是涉及毒素反应基因的重复.
- 证明净化选择强烈塑造CNP位置,删除比重复更强烈的选择.
结论:
- 自然选择在复制数突变的进化和基因组组织中发挥着关键作用.
- 净化选择更强烈地影响删除而不是重复,以及重复重叠的基因或位于X染色体上的重复.
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