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Genomic DNA in Eukaryotes00:58

Genomic DNA in Eukaryotes

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Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
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Genome Size and the Evolution of New Genes03:21

Genome Size and the Evolution of New Genes

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While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
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Exon Recombination02:32

Exon Recombination

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The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
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Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
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Bacterial gastroenteritis, characterized by diarrhea, abdominal cramps, and vomiting, is often caused by ingestion of contaminated food or water and is frequently associated with pathogenic Escherichia coli strains. These microbes exploit two principal mechanisms to inflict disease.Shiga toxin–producing E. coli, also referred to as STEC—notably O157:H7—release Shiga toxins that target ribosomes, blocking protein synthesis. The B subunit of the toxin binds the host glycolipid...
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Mapping Bacterial Functional Networks and Pathways in Escherichia Coli using Synthetic Genetic Arrays
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在大肠杆菌基因之间建立新的联系.

Trey Ideker1

  • 1Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA. grey@bioeng.ucsd.edu

Cell
|July 1, 2008
PubMed
概括
此摘要是机器生成的。

在大肠杆菌中的工程基因网络显示出令人惊的稳健性. 大多数新的互动对增长没有影响,有些甚至改善了健康状况,揭示了对网络可变性的洞察力.

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科学领域:

  • 合成生物学 合成生物学
  • 微生物学 微生物学
  • 系统生物学 系统生物学

背景情况:

  • 基因调节网络 (GRNs) 控制细胞功能.
  • 了解GRN的强度和可变性对于合成生物学应用至关重要.

研究的目的:

  • 研究引入新型转录相互作用对大肠杆菌引入新型转录相互作用的影响.
  • 评估这些工程相互作用对细菌生长和健康的影响.

主要方法:

  • 在大肠杆菌中系统添加新的转录相互作用.
  • 增长测试用于测量基因修饰的健康后果.

主要成果:

  • 大多数工程转录相互作用不会对细菌生长产生负面影响.
  • 引入的相互作用的一个子集出乎意料地增强了细菌的适应性.
  • 研究结果表明,大肠杆菌基因网络内存在固有的强度.

结论:

  • 大肠杆菌基因网络对新监管要素的引入表现出显著的稳定性.
  • 这项研究提供了基因网络的可演变性证据,挑战了以前的假设.
  • 这些见解对于设计更可预测和更适应的合成生物系统有价值.