在70S核糖体上的翻译终结的结构基础
Martin Laurberg1, Haruichi Asahara, Andrei Korostelev
1Department of Molecular, Cell and Developmental Biology and Center for Molecular Biology of RNA, University of California at Santa Cruz, Santa Cruz, California 95064, USA.
Nature
|July 4, 2008
概括
I型释放因子 (RF1) 通过识别信使RNA上的停止编码子来终止蛋白质合成. 这项研究揭示了RF1与核糖体结合的晶体结构,显示了它如何触发基-tRNA水解.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 遗传学 遗传学 是一个
背景情况:
- 蛋白质合成终止对于细胞功能至关重要.
- I型释放因子 (RF1) 通过识别停止符号来调节终止.
- 了解RF1-核糖体相互作用是破译翻译调节的关键.
研究的目的:
- 通过RF1.1阐明停止编码子识别的结构基础.
- 为了研究RF1-介导的基-tRNA水解的机制.
- 为翻译终止提供原子层面的见解.
主要方法:
- 使用X射线晶体学来确定与RF1,tRNA和UAA停止编码子复杂的Thermus thermophilus 70S核糖体的结构.
- 进行了高分辨率 (3.2 Å) 的结构分析.
主要成果:
- 晶体结构显示RF1在由保存的RF1元素和16S核糖体RNA组成的特定口袋中参与UAA停止编码.
- 一种诱导适合机制稳定了RF1的构造,以便与基转移酶中心相互作用.
- 保存的GGQ基因的Gln 230直接参与基-tRNA水解.
结论:
- 该结构提供了一个详细的分子机制,用于停止编码子识别和翻译终止.
- RF1的保存的GGQ动机在水解中发挥着直接的催化作用.
- 这项工作增强了我们对蛋白质合成终结的复杂过程的理解.
相关概念视频
Termination of Translation
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
Termination of Translation
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
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First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
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Initiation of Translation
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Improving Translational Accuracy
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...


