相关实验视频
Updated: Jul 2, 2026

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In Vitro Analysis of E3 Ubiquitin Ligase Function
Published on: May 14, 2021
对于 Lys 63 链接的多比基链的特定裂变的结构基础
Yusuke Sato1, Azusa Yoshikawa, Atsushi Yamagata
1Structural Biology Laboratory, Life Science Division, Synchrotron Radiation Research Organization and Institute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo 113-0032, Japan.
Nature
|September 2, 2008
概括
这项研究揭示了AMSH-LP的结构,这是一种双化酶 (DUB),与特定的化链复合. 这种结构阐明了AMSH-LP如何去除与lys 63结合的多比基链,这对于受体贩运至关重要.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 脱化酶 (DUBs) 是细胞过程的关键调节者,通过去除ubiquitin.
- AMSH和AMSH-LP是依赖的DUB,通过Lys 63链接的多基因链裂变参与受体贩运.
研究的目的:
- 为了确定人类AMSH-LP DUB域的晶体结构.
- 为了阐明由AMSH家族成员进行的Lys 63结合特异性脱基化机制.
主要方法:
- 采用X射线晶体学,单独获得AMSH-LP DUB域的结构,并与Lys 63相关的di-ubiquitin复合.
- 进行了高分辨率结构分析 (1.2A和1.6A).
主要成果:
- AMSH-LP DUB域的晶体结构显示了一个具有两个插入 (Ins-1和Ins-2) 的催化核心.
- 该结构显示了酶与 Lys 63 链链中的远端和近端泛素分子之间的特定相互作用.
- 确定了一个催化槽,容纳了关键的乌比奎残留物和异联结.
结论:
- 这是首次报告的DUB结构复杂化与异相关联的乌比奎链.
- 这些发现揭示了由AMSH家族的DUBs所产生的Lys 63链路特异性二维基化背后的分子机制.
相关概念视频
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Regulated Protein Degradation
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Covalently Linked Protein Regulators
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein.
These groups modify specific amino acids in a protein.
The Proteasome Structure
The ubiquitin-proteasome pathway is a well-known mechanism utilized by eukaryotic cells to remove cytoplasmic proteins that are misfolded, damaged, or no longer needed. In this pathway, the protein that needs to be eliminated undergoes a process called ubiquitination, where a chain of ubiquitin molecules is attached to the 48th lysine residue of the target protein. This ubiquitin modification helps the proteasome distinguish between a target protein and a healthy protein.
The proteasome is an...
The proteasome is an...
Protein Complexes with Interchangeable Parts
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...

