在鱼物种中保存多态简单序列位点
C Schlötterer1, B Amos, D Tautz
1Institut für Genetik und Mikrobiologie, Universität München, Germany.
Nature
|November 7, 1991
概括
为试点鱼开发的简单序列长度多态 (SSLP) 起始剂成功地在各种鱼物种中放大了DNA. 这种对非编码DNA序列的高度保护简化了对鱼的遗传研究.
科学领域:
- 遗传学 遗传学 是一个
- 分子生物学分子生物学
- 海洋哺乳动物科学科学
背景情况:
- 简单序列长度多态 (SSLP) 在真核细胞DNA中很常见,对种群遗传学有价值.
- 试点 (Globicephala melas) 中的SSLP以前已经对它们的交配系统和种群结构产生了洞察力.
研究的目的:
- 为了研究聚合酶连锁反应 (PCR) 设计用于试点鱼SSLP的原始剂的跨物种适用性.
- 评估各种鱼物种中简单序列位点中的侧翼序列的保存情况.
主要方法:
- 利用针对Globicephala melas开发的PCR原料,在各种鱼物种中放大同源基位.
- 克隆和测序了来自11种不同的鱼物种 (牙和鱼) 的放大位置.
主要成果:
- 同源的基位被成功地扩大到一个广泛的牙 (Odontoceti) 和 (Mysticeti) 鱼.
- 沿着简单序列线段的序列表现出异常高的保护性,在估计的3500万至4000万年中,平均差异仅为3.2%.
- 这种较低的分歧率表明,有可能重新评估现代鱼物种的进化年龄.
结论:
- 针对一种鱼物种的SSLP设计的PCR原料由于保留了侧翼序列,可以广泛应用于其他鱼物种.
- 这种高度的保护性促进了SSLP DNA指纹的使用,用于在各种类动物中进行基因分析.
- 这些发现突出了鱼物种中非编码DNA的显著低分歧率,促使进一步的进化研究.
相关概念视频
Conservation of Small Populations
Small population sizes put a species at extreme risk of extinction due to a lack of variation, and a consequent decrease in adaptability. This weakens the chances of survival under pressures such as climate change, competition from other species, or new diseases. Large populations are more likely to survive pressures such as these, as such populations are more likely to harbor individuals that have genetic variants that are adaptive under new stresses. Small populations are much less likely to...
Conserved Binding Sites
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
Multi-species Conserved Sequences
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Single Nucleotide Polymorphisms-SNPs
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Modern Molecular Taxonomy
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...


