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关闭基对对RNA四虫异常稳定性的贡献:分子模拟和静电因素的作用
Joshua M Blose1, David J Proctor, Narayanan Veeraraghavan
1Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Journal of the American Chemical Society
|May 30, 2009
概括
通过分子模拟,两种不同的RNA四旋翼家族实现了显著的稳定性,呈现出与它们的关闭基对相似的功能. 这种模仿,涉及静电相互作用和盐依赖,解释了它们增强的热力学稳定性.
科学领域:
- 分子生物学分子生物学
- RNA结构和功能 RNA结构和功能
- 生物物理学的生物物理.
背景情况:
- RNA发针是关键的二次结构,四叶草是最常见的,经常被保存.
- 当CG闭合基对 (cbps) 出现时,UNCG和GNRA四叶草家族表现出异常的热力学稳定性,但基本的分子机制尚未完全理解.
研究的目的:
- 为了研究CGcbps在UNCG和GNRA四中增强的热力学稳定性的分子基础.
- 探索分子模拟的概念作为统一的原则,这些多样化的四叶草家族的稳定性.
主要方法:
- 使用核基和功能组替代的热力学分析.
- 非线性Poisson-Boltzmann (NLPB) 方程用于识别和分析循环-cbp静电相互作用.
- 实验测量稳定性依赖于盐度的实验测量 ([Na(+) ]).
主要成果:
- 尽管UNCG和GNRA四叶草家族的折叠不同,但它们的功能与CGcbp主要沟边缘相似,表明分子模仿.
- 破坏循环-cbp静电相互作用显著改变了稳定性,支持了这些相互作用在分子模拟中的作用.
- 使用CGcbps的四叶草显示稳定性对盐度的依赖性降低,这与通过NLPB计算的更高的表面电荷密度有关.
结论:
- CG cbp主要沟边缘的分子模拟是UNCG和GNRA四毛的特殊稳定性的关键因素.
- 静电相互作用和依赖盐的稳定性是这种观察到的分子模拟的关键组成部分.
- 这种分子模拟原理可能是一个广泛存在的机制,有助于各种RNA和DNA基因的功能.
相关概念视频
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The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
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The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
RNA Structure
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
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The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
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DNA has a double-helix structure. The...
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Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
