在化学宇宙数据库GDB-13中,有9.7亿种类似药物的小分子用于虚拟选
Lorenz C Blum1, Jean-Louis Reymond
1Department of Chemistry and Biochemistry, University of Berne, Freiestrasse 3, CH-3012 Berne, Switzerland.
Journal of the American Chemical Society
|June 10, 2009
概括
GDB-13数据库提供了近10亿种新的有机分子,这些新分子是使用化学稳定性和合成规则生成的. 这使得它成为最大的小分子免费收集用于研究的集合.
科学领域:
- 计算化学是一种计算化学.
- 化学信息学 化学信息学
- 有机合成 有机合成
背景情况:
- 对于药物发现和材料科学来说,全面的化学数据库的需求至关重要.
- 现有的数据库往往缺乏探索新化学空间所需的规模和多样性.
研究的目的:
- 列举并提供对小型有机分子最大可能的数据集的访问.
- 建立公开可用的化学结构数据库的大小和范围的基准.
主要方法:
- 应用简单的化学稳定性规则.
- 包括合成可行性标准.
- 分子结构的系统列举,最多13个重原子 (C,N,O,S,Cl).
主要成果:
- 创建GDB-13,一个包含977,468,314个独特的小型有机分子的数据库.
- 该数据库是目前可用的同类数据库中最广泛的集合.
- 结构遵循定义的稳定性和合成可访问性参数.
结论:
- GDB-13显著扩大了研究人员可搜索的化学空间.
- 这个资源促进了药物设计,化学生物学和材料科学等领域的探索.
- 为未来的大规模化学清单工作提供了基础.
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