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相关概念视频

Covalently Linked Protein Regulators02:04

Covalently Linked Protein Regulators

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Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
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Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

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Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
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The Proteasome02:18

The Proteasome

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Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
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Regulated Protein Degradation02:58

Regulated Protein Degradation

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It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
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Export of Misfolded Proteins out of the ER01:32

Export of Misfolded Proteins out of the ER

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After folding, the ER assesses the quality of secretory and membrane proteins. The correctly folded proteins are cleared by the calnexin cycle for transport to their final destination, while misfolded proteins are held back in the ER lumen. The ER chaperones attempt to unfold and refold the misfolded proteins but sometimes fail to achieve the correct native conformation. Such terminally misfolded proteins are then exported to the cytosol by ER-associated degradation or ERAD pathway for...
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The Proteasome01:13

The Proteasome

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Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
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相关实验视频

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Method for Measuring the Activity of Deubiquitinating Enzymes in Cell Lines and Tissue Samples
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Method for Measuring the Activity of Deubiquitinating Enzymes in Cell Lines and Tissue Samples

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定义人类二化酶相互作用景观.

Mathew E Sowa1, Eric J Bennett, Steven P Gygi

  • 1Department of Pathology, Harvard Medical School, Boston, MA 02115, USA.

Cell
|July 21, 2009
PubMed
概括

研究人员绘制了对二氧化酶 (Dubs) 的蛋白质相互作用的地图,揭示了它们在关键细胞过程中的作用. 这项研究提供了对Dub互动体的基本理解,以及它在无素-蛋白酶体通路中的参与.

科学领域:

  • 生物化学 生物化学
  • 分子生物学分子生物学
  • 蛋白质组学是指蛋白质组学.

背景情况:

  • 脱化酶 (Dubs) 通过去除ubiquitin来调节蛋白质的活性和丰富性.
  • 大多数Dubs的功能,目标和监管在很大程度上仍然没有特征.
  • 了解Dubs对于破译泛素-蛋白酶体通路至关重要.

研究的目的:

  • 通过全球蛋白质组分析系统地研究Dubs的功能.
  • 为了识别与Dubs.相关的蛋白质复合体.
  • 绘制Dub互动景观的地图,并将未研究的Dub置于生物通路中.

主要方法:

  • 开发CompPASS软件平台,用于不偏见的互动信任测量.
  • 平行非互惠的蛋白质组数据分析.
  • 整合基因本体学,相互作用拓学,亚细胞局部化和功能研究.

主要成果:

  • 鉴定了与75个Dubs.相关的774个候选相互作用蛋白的鉴定.
  • 将Dubs连接到各种细胞过程中,包括蛋白质循环,转录,RNA处理,DNA损伤和与ER相关的降解.
  • 在Dub互动组中发现了新的相互作用和蛋白质复合体.

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Measuring Enzymatic Activity of Neurodevelopmental Disorder-Associated Deubiquitylating Enzymes via an In Vitro Ubiquitin Chain Cleavage Assay
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结论:

  • 这项研究提供了Dub互动景观的第一个全面视图.
  • 没有特征的Dubs被放置在假定的生物通路内.
  • 建立了对Dubs在泛素-蛋白酶体通路中的作用的新见解.