转录调节电路:从字母来预测数字
Harold D Kim1, Tal Shay, Erin K O'Shea
1Howard Hughes Medical Institute, Harvard University Faculty of Arts and Sciences Center for Systems Biology, Department of Molecular and Cellular Biology, Cambridge, MA 02138, USA.
概括
研究人员审查了模型转录调节电路的方法,这些电路控制基因表达. 结合小规模和大规模的方法可以揭示这些基因网络的复杂运作.
科学领域:
- 分子生物学分子生物学
- 系统生物学 系统生物学
- 生物信息学是一种生物信息学.
背景情况:
- 转录调节电路通过将信号整合到信使RNA (mRNA) 水平来控制基因表达.
- 高通量技术的进步产生了大量的基因表达数据.
- 了解这些电路对于破译细胞功能至关重要.
研究的目的:
- 审查用于建模转录调节电路的实验和计算方法.
- 讨论小规模和大规模建模方法的整合.
- 突出了解基因调节网络"工作和布线"的潜力.
主要方法:
- 对现有关于实验和计算方法的文献进行审查.
- 对不同尺度的定量电路建模技术的分析.
- 讨论通过定量和高通量技术生成数据.
主要成果:
- 识别各种方法来构建转录调节的定量模型.
- 将模型分为小规模 (详细电路) 和大规模 (全基因组) 的方法.
- 强调小规模和大规模建模策略之间的协同作用.
结论:
- 将详细的小规模电路模型与更广泛的大规模模型相结合,提供了一种强大的方法.
- 这种综合策略可以阐明转录调节的复杂机制.
- 未来的研究可以利用这些结合方法,全面地绘制基因调节网络.
相关概念视频
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
Combinatorial Gene Control
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
Master Transcription Regulators
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Master Transcription Regulators
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Transcription
Overview
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...


