细菌中转录调节电路的演变
J Christian Perez1, Eduardo A Groisman
1Department of Molecular Microbiology, Howard Hughes Medical Institute, Washington University School of Medicine, Campus Box 8230, 660 S. Euclid Avenue, St. Louis, MO 63110, USA.
Cell
|July 28, 2009
概括
相关的生物体使用类似的转录因子来控制基因表达,但往往调节不同的基因组. 细菌调节进化涉及祖先的转录因子,基因转移和促进体变化,导致不同的基因调节.
科学领域:
- 进行比较的基因组学.
- 分子进化的分子进化.
- 基因调节 基因调节
背景情况:
- 生物经常使用正统的转录因子来响应环境线索.
- 矛盾的是,这些保存的因素经常调节跨物种不同的基因组.
- 了解驱动这些调节差异的机制对于进化生物学至关重要.
研究的目的:
- 研究相关生物体中不同基因调节的基础机制,特别关注细菌.
- 在监管分歧中区分促进子重新连接与物种特异基因的作用.
- 探索横向基因转移对细菌调节电路进化的影响.
主要方法:
- 在相关物种中对转录因子活性和向基因进行比较分析.
- 检查共享和特定物种基因的促进器结构.
- 在 silico 和实验方法来评估水平基因转移的作用.
主要成果:
- 在真核生物中,共享基因的促进子重新连接是调控分歧的主要驱动因素.
- 在细菌中,祖先的转录因子通常控制物种特异性基因,有助于调控新性.
- 水平基因转移显著影响细菌调节电路的演变.
结论:
- 监管分歧源于真核生物和细菌中不同的机制.
- 细菌的调节进化是由祖先因素的相互作用,水平基因转移和促进体修饰的特征.
- 这些进化过程导致了物种特异性基因调节,尽管使用了保存的调节蛋白.
相关概念视频
Prokaryotic Transcriptional Activators and Repressors
The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...
Transcription of prokaryotic...
Bacterial Transcription
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Prokaryotic Transcriptional Activators and Repressors
The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...
Transcription of prokaryotic...
Transcription in Prokaryotes
Transcription is a highly regulated process that converts genetic information into RNA molecules. The transcription cycle is divided into three key stages: initiation, elongation, and termination, each driven by specific molecular mechanisms.Initiation of TranscriptionIn bacteria, transcription begins when the RNA polymerase core enzyme associates with a sigma factor to form a holoenzyme. For example, the E. coli sigma factor called σ70 forms a holoenzyme, which recognizes the -10 (Pribnow box)...
Constitutive and Regulated Gene Expression
Gene expression in prokaryotes is governed by constitutive and regulated systems, allowing cells to balance the production of essential proteins with adaptive responses to environmental changes.Constitutive Gene ExpressionConstitutive, or housekeeping, genes are continuously expressed as they encode proteins vital for fundamental cellular processes. These include enzymes for glycolysis, ribosomal components for protein synthesis, and proteins involved in DNA replication. Their constant...
Global Regulatory Systems
Global regulatory systems in bacteria enable rapid and coordinated responses to environmental changes by integrating sensory inputs with gene expression, ensuring efficient adaptation to fluctuating conditions. Key global regulatory mechanisms include regulons, two-component systems, sigma factors, and secondary messengers.Regulons and Global RegulatorsA regulon is a collection of genes and operons controlled by a common global regulator. These regulators enable bacteria to prioritize resource...


