核细胞体的波动决定了RNA聚合酶II的转录动态
Courtney Hodges1, Lacramioara Bintu, Lucyna Lubkowska
1Jason L. Choy Laboratory of Single-Molecule Biophysics and Biophysics Graduate Group, University of California, Berkeley, CA 94720, USA.
概括
RNA聚合酶II (Pol II) 通过纠正核体的波动来导航核体,而不是通过活跃的DNA分离. 在转录过程中,通过核细胞体,通过DNA循环将基因组转移到聚合酶后面.
科学领域:
- 分子生物学分子生物学
- 生物物理学的生物物理.
- 遗传学 是一个遗传学.
背景情况:
- 核细胞是真核生物中DNA包装的基本单元.
- 通过RNA聚合酶II (Pol II) 的转录需要导航这些核体结构.
- 了解Pol II-核酶体相互作用对于基因调节至关重要.
研究的目的:
- 研究Pol II通过核细胞体转录的物理机制.
- 描述Pol II和核细胞障碍之间的动态相互作用.
- 阐明核体波动在转录调节中的作用.
主要方法:
- 开发和应用一个光学笔测试.
- 实时观察个别的Pol II复合体转录核细胞DNA.
- 对Pol II动态和暂停行为的定量分析.
主要成果:
- 核体作为波动屏障,增加Pol II暂停并降低转录速度.
- 聚二的功能就像一个子,纠正核体的波动,而不是积极分离DNA和基因组.
- 通过一种短暂的DNA循环获得了转录聚合酶背后的组织组织蛋白转移的直接证据.
结论:
- 聚二和核细胞之间的物理相互作用为转录调节提供了基础.
- 核的波动显著影响了Pol II的流动性和暂停动态.
- 波尔II的状机制有助于通过染色体屏障进行转录.
相关概念视频
RNA Polymerase II Accessory Proteins
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
RNA Polymerase II Accessory Proteins
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
Transcription Initiation
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
Chromatin Structure Regulates pre-mRNA Processing
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
Eukaryotic RNA Polymerases
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...


