在核子原子核粒子附近的同位体大气和水合模式
Christopher K Materese1, Alexey Savelyev, Garegin A Papoian
1Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, USA.
Journal of the American Chemical Society
|September 26, 2009
概括
移动离子和水分子深入核细胞体,帮助DNA中和染色质折叠. 这项研究揭示了离子和水合相互作用如何影响高阶染色质结构.
科学领域:
- 生物物理学的生物物理.
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 染色体折叠对于DNA紧缩和基因调节至关重要.
- 核细胞,染色体的基本单元,在理解DNA中和可访问性方面提出了挑战.
- 移动离子和水在核细胞结构和功能中的作用需要详细的研究.
研究的目的:
- 用全原子分子动力学模拟来研究核体周围移动离子的凝聚.
- 阐明核子体内DNA中和的机制.
- 探索离子和水合相互作用对更高阶染色质结构的影响.
主要方法:
- 广泛的全原子分子动力学模拟.
- 对离子凝聚和分布在核细胞核粒子周围的分析.
- 核体DNA中和和形状动态的研究.
主要成果:
- 核子体在百纳秒的时间尺度上表现出最小的构造波动.
- 核体DNA比自由DNA更有效地被组素电荷和移动离子中和.
- 离子凝结受到基质核上的酸性补丁的显著影响.
- 超过一千个水分子透于核体,促进深层离子透.
结论:
- 核子体内的离子和水化相互作用在染色质紧缩中发挥着关键作用.
- 这些发现提供了对控制DNA中和核内可访问性的物理机制的见解.
- 这项研究有助于了解离子,水和染色质结构在高阶纤维形成中的复杂相互作用.
相关概念视频
The Nucleosome
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
The Nucleosome
DNA in a human cell is almost 2m long and it is packed inside a tiny nucleus that is only a few microns in diameter. The level of compaction of DNA inside the nucleus is astonishing. It is organized into several sequentially higher levels of compaction to fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
The Nucleosome
DNA in a human cell is almost 2m long and it is packed inside a tiny nucleus that is only a few microns in diameter. The level of compaction of DNA inside the nucleus is astonishing. It is organized into several sequentially higher levels of compaction to fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
The Nucleosome Core Particle
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...
The Nucleosome Core Particle
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosome Remodeling
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...


