相关实验视频
Updated: Jun 19, 2026

11:41
Mapping Mammalian 3D Genome Interactions with Micro-C-XL
Published on: November 3, 2023
对远程相互作用的全面绘制揭示了人类基因组的折叠原理
Erez Lieberman-Aiden1, Nynke L van Berkum, Louise Williams
1Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), MA 02139, USA.
概括
Hi-C技术揭示了三维基因组架构,识别了开放和关闭的染色质的不同隔间. 这种空间组织类似于一个碎形球体,使得有效的基因组包装和可访问性.
科学领域:
- 基因组学和分子生物学
- 生物物理学的生物物理.
- 计算生物学 计算生物学
背景情况:
- 了解三维 (3D) 基因组架构对于破译基因调节和功能至关重要.
- 以前的模型,如球状平衡模型,提供了洞察力,但没有完全捕捉到动态基因组折叠.
研究的目的:
- 介绍Hi-C,一种用于绘制3D基因组架构的新方法.
- 在人类基因组中,研究基因组组织在兆基层规模.
- 描述染色体状态和空间组织之间的关系.
主要方法:
- 开发并应用了Hi-C,这种技术结合了基于近距离的绑定与大规模并行测序.
- 构建了人类基因组的空间近距离地图,分辨率为1兆基.
主要成果:
- 证实了染色体区域的存在和基因丰富的染色体的接近.
- 确定了两个全基因组区,对应于开放色素和封闭色素的空间分离.
- 观察到,大基基尺度的染色质构成与一个碎形球体模型保持一致,与球体平衡模型不同.
结论:
- Hi-C是一个强大的工具,用于绘制动态的全基因组构造图.
- 碎形球体模型更好地描述了大规模的基因组组织,允许密集的包装和可访问性.
- 染色质的空间分离成部分是基因组架构的一个关键特征.
相关概念视频
Protein Folding
Overview
Protein Folding
Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Folding
Overview
The Nucleosome
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
Conserved Binding Sites
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
The DNA Helix
Deoxyribonucleic acid, or DNA, is the genetic material responsible for passing traits from generation to generation in all organisms and most viruses. DNA is composed of two strands of nucleotides that wind around each other to form a spring-like structure called a double helix. However, the double helix is not perfectly symmetrical. Instead, there are regularly occurring grooves in the structure. The major groove occurs where the sugar-phosphate backbones are relatively far apart. This space...

