金属沙佩龙SlyD的Ni (II) 结合特性
Harini Kaluarachchi1, Duncan E K Sutherland, Alex Young
1Department of Chemistry, University of Toronto, Toronto, Ontario, Canada M5S 3H6.
Journal of the American Chemical Society
|December 2, 2009
概括
大肠杆菌金属沙佩龙SlyD以高亲和力结合多达7个离子. 这种结合会影响SlyDD.
科学领域:
- 生物化学 生物化学
- 金属蛋白的研究研究.
- 分子生物学分子生物学
背景情况:
- 金属沙佩龙促进金属辅因子向蛋白质的传递.
- 对于细胞过程至关重要,但过量是有毒的.
- 大肠杆菌的SlyD蛋白涉及稳态和[Ni-Fe]-酶组合.
研究的目的:
- 为了研究大肠杆菌SlyD的结合特性.
- 阐明SlyD在积累和代谢中的作用.
- 了解结合对SlyD的结构和功能影响.
主要方法:
- 电子喷射电离质谱仪 (ESI-MS) 用于分析非共价金属-蛋白质复合体.
- 结构分析技术用于观察金属诱导的形状变化.
- 射线吸收光谱 (XAS) 用于确定离子协调几何形状.
- 鉴定SlyD突变的特征,以确定结合的关键残留物.
主要成果:
- SlyD可以与7个尼克尔离子结合,非合作,具有亚微分子亲和力.
- 结合会诱导SlyD的微妙结构变化,影响N端和C端域.
- 结合部位涉及β转形成,而囊残留物增强结合亲和力和结合能力.
- SlyD展示了各种离子协调几何和数字.
结论:
- 在大肠杆菌中,SlyD作为一种多离子结合金属沙佩龙起作用.
- 这种蛋白质在的稳态和金属酶组合中起着至关重要的作用.
- 结构灵活性和特定残留物有助于SlyD的结合能力.
更多相关视频
11:38Quantifying the Binding Interactions Between Cu(II) and Peptide Residues in the Presence and Absence of Chromophores
Published on: April 5, 2022
11:04Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
Published on: September 7, 2019
相关概念视频
Metal-Ligand Bonds
The hemoglobin in the blood, the chlorophyll in green plants, vitamin B-12, and the catalyst used in the manufacture of polyethylene all contain coordination compounds. Ions of the metals, especially the transition metals, are likely to form complexes.
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
Complexation Equilibria: The Chelate Effect
In complexation reactions, metal atoms or cations interact with ligands to form donor-acceptor adducts called metal complexes. Ligands that bind through one donor site are monodentate, ligands with two donor sites are bidentate, and those with more than two donor sites are polydentate ligands. For example, ethylene diamine is a bidentate ligand that binds through two nitrogen donor atoms, forming a five-membered ring. EDTA is a polydentate ligand that binds through four oxygen and two nitrogen...
Ligand Binding and Linkage
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...
Extraction: Advanced Methods
Metal ions can be separated from one another by complexation with organic ligands–the chelating agent– to form uncharged chelates. Here, the chelating agent must contain hydrophobic groups and behave as a weak acid, losing a proton to bind with the metal. Since most organic ligands used in this process are insoluble or undergo oxidation in the aqueous phase, the chelating agent is initially added to the organic phase and extracted into the aqueous phase. The metal-ligand complex is formed in...
Chirality at Nitrogen, Phosphorus, and Sulfur
Chirality is most prevalent in carbon-based tetrahedral compounds, but this important facet of molecular symmetry extends to sp3-hybridized nitrogen, phosphorus and sulfur centers, including trivalent molecules with lone pairs. Here, the lone pair behaves as a functional group in addition to the other three substituents to form an analogous tetrahedral center that can be chiral.
A consequence of chirality is the need for enantiomeric resolution. While this is theoretically possible for all...
A consequence of chirality is the need for enantiomeric resolution. While this is theoretically possible for all...
Structural Isomerism
Isomerism in Complexes
Isomers are different chemical species that have the same chemical formula. Structural isomerism of coordination compounds can be divided into two subcategories, the linkage isomers and coordination-sphere isomers.
Linkage isomers occur when the coordination compound contains a ligand that can bind to the transition metal center through two different atoms. For example, the CN− ligand can bind through the carbon atom or through the nitrogen atom. Similarly, SCN− can be...
Isomers are different chemical species that have the same chemical formula. Structural isomerism of coordination compounds can be divided into two subcategories, the linkage isomers and coordination-sphere isomers.
Linkage isomers occur when the coordination compound contains a ligand that can bind to the transition metal center through two different atoms. For example, the CN− ligand can bind through the carbon atom or through the nitrogen atom. Similarly, SCN− can be...
