在氨基催化过程中直接观察一种酶胺中间体
Xueyong Zhu1, Fujie Tanaka, Richard A Lerner
1Department of Chemistry, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.
Journal of the American Chemical Society
|December 9, 2009
概括
研究人员在阿尔多酶抗体晶体结构中观察到一个稳定的酶胺中间体. 这一发现表明蛋白质中的氨基催化可能比以前想象的要简单,指导未来的催化剂设计.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 催化剂是一种催化剂.
背景情况:
- 胺中间体对于生物催化剂至关重要,如阿尔多拉酶和氨酸有机催化剂.
- 在催化过程中胺中间体的直接结构证据在历史上很少见.
- 阿尔多酶抗体是工程催化剂,具有潜在的新型催化机制.
研究的目的:
- 在催化抗体中对酶胺中间体进行结构性表征.
- 研究工程蛋白质中基于氨基的催化剂的催化机制.
- 为新型有机催化剂和生物催化剂的合理设计提供见解.
主要方法:
- 使用X射线结晶学来确定阿尔多酶抗体33F12.12的结构.
- 抗体在复合体中与1,3-二二衍生物基质结晶.
- 结构分析的重点是识别和表征酶胺中间体.
主要成果:
- 在阿尔多酶抗体33F12.2的晶体结构中观察到一种稳定的酶胺中间体.
- 结构显示,与天然的酸酶相比,抗体中的氨基催化必需残留物较少.
- 抗体口袋的疏水环境有助于酶胺的形成.
结论:
- 观察到的酶氨酸复合体为抗体中的酶氨酸催化提供了直接的结构证据.
- 蛋白质中的氨基催化可能不像以前假设的那么复杂.
- 这些发现将指导有效的氨酸有机催化剂和生物催化剂的合理设计.
相关概念视频
Aldehydes and Ketones with Amines: Enamine Formation Mechanism
Enamine formation involves the addition of carbonyl compounds to a secondary amine through a series of reactions. The mechanism begins with the generation of carbinolamine, a nucleophilic attack followed by several proton transfer reactions. The hydroxyl group of the carbinolamine is converted into water to make a better leaving group that can push the reaction forward by eliminating a water molecule. In enamine formation, the last step involves the abstraction of a proton from the α carbon to...
Aldehydes and Ketones with Amines: Imine Formation Mechanism
Imine formation involves the addition of carbonyl compounds to a primary amine. It begins with the generation of carbinolamine through a series of steps involving an initial nucleophilic attack and then several proton transfer reactions. The second part includes the elimination of water, as a leaving group, to give the imine.
Imines are formed under mildly acidic conditions. A pH of 4.5 is ideal for the reaction.
If the pH is low or the solution is too acidic, the reaction slows down in the...
Imines are formed under mildly acidic conditions. A pH of 4.5 is ideal for the reaction.
If the pH is low or the solution is too acidic, the reaction slows down in the...
Aldehydes and Ketones with Amines: Imine and Enamine Formation Overview
Primary amines react with carbonyl compounds—aldehydes and ketones—to generate imines. Imines consist of a C=N double bond and are named Schiff bases after its discoverer—the German chemist Hugo Schiff. On the other hand, secondary amines react with carbonyl compounds to give enamines. In enamines, the presence of a C=C double bond adjacent to the nitrogen atom leads to the delocalization of the lone pair.
Synthesis of α-Substituted Carbonyl Compounds: The Stork Enamine Reaction
α-Substituted ketones or aldehydes can be synthesized from enamines by the Stork enamine reaction, named after its pioneer Gilbert Stork. Enamines are useful synthetic intermediates where the lone pair on nitrogen is in conjugation with the C=C bond. They resemble enolate ions, as the resonance forms of both species have a nucleophilic α carbon.
Preparation of Amines: Reductive Amination of Aldehydes and Ketones
Carbonyl compounds and primary amines undergo reductive amination first to produce imines, followed by secondary amines in the same reaction mixture, using selective reducing agents like sodium cyanoborohydride or sodium triacetoxyborohydride. Reductive amination produces different degrees of substitution of amines depending on the starting amine substrate.
Amines to Amides: Acylation of Amines
Various carboxylic acid derivatives (such as acid chlorides, esters, and anhydrides) can be used for the acylation of amines to yield amides. The reaction requires two equivalents of amines. The first amine molecule functions as a nucleophile and attacks the carbonyl carbon to produce a tetrahedral intermediate. This is followed by the loss of the leaving group and restoration of the C=O bond.
Next, the second equivalent of amine serves as a Brønsted base and deprotonates the quaternary amide...
Next, the second equivalent of amine serves as a Brønsted base and deprotonates the quaternary amide...


