核糖体依赖性内核酶RelE的mRNA识别和分裂的结构基础
Cajetan Neubauer1, Yong-Gui Gao, Kasper R Andersen
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.
Cell
|December 17, 2009
概括
在严格反应过程中,细菌内核酶RelE在核糖体上分裂mRNA. 结构研究显示RelE与A位点结合,导致mRNA通过水解分裂以进行翻译控制.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 细菌遗传学 细菌遗传学
背景情况:
- 翻译控制调节了基因表达.
- 在细菌严格反应过程中,mRNA被RelE内核酶降解.
- 在核糖体上RelE作用的机制尚未完全理解.
研究的目的:
- 阐明RelE识别和与细菌核糖体结合的分子基础.
- 通过RelE.确定mRNA裂变的机制.
- 为了提供结构性洞察力,对依赖于核糖体的翻译调节.
主要方法:
- 孤立的大肠杆菌RelE的X射线晶体学,并与Thermus thermophilus 70S核糖体结合.
- 在mRNA分裂之前和之后对核糖体-mRNA-RelE复合物的分析.
主要成果:
- 在2.5 Å确定了RelE的晶体结构,在3.3 Å和3.6 Å确定了与核糖体结合的RelE复合体.
- 发现RelE占据了核糖体的A位点.
- 裂变发生在第二个mRNA密码核酸后,由RelE重定向和激活mRNA进行水解促进.
结论:
- 与A位点的RelE结合和与mRNA和16SrRNA的相互作用解释了核糖体的要求和序列特异性.
- 这些结构为细菌中mRNA分裂介导的转化调节提供了详细的机制.
相关概念视频
pre-mRNA Processing
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl guanosine). This 5’ cap helps the...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl guanosine). This 5’ cap helps the...
Pre-mRNA Processing
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl guanosine). This 5’ cap helps the...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl guanosine). This 5’ cap helps the...
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Directing Proteins to the Rough Endoplasmic Reticulum
The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Nucleic Acid Structure
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...
DNA Structure
DNA has a double-helix structure. The...


