染色体重塑器ACF作为一个二维电机来空间核细胞的作用
Lisa R Racki1, Janet G Yang, Nariman Naber
1Department of Biochemistry and Biophysics, University of California, San Francisco, California 94158, USA.
Nature
|December 25, 2009
概括
取决于ATP的染色体组装因子 (ACF) 作为二元体,以双向移动核细胞. 这种新的二维电机机制允许协调运动,这对于基因沉默和染色质凝聚至关重要.
科学领域:
- 染色体生物学 染色体生物学
- 分子电机是分子电机.
- 基因调节 基因调节
背景情况:
- 均间隔的核细胞与凝聚的染色体和基因沉默有关.
- 取决于ATP的染色体组装因子 (ACF) 在体外产生核细胞间距,并且对于体内沉默至关重要.
- ACF比较快地将核细胞移动到较长的DNA侧边区域,但双向移动的机制尚不清楚.
研究的目的:
- 阐明ACF实现双向核酶体运动的机制.
- 在核细胞转位过程中确定ACF的功能单元和架构.
主要方法:
- 单粒子电子显微镜用于ATPase-核体复合物的3D重建.
- 生物化学试验用于研究核细胞的运动,这取决于ACF度和核酸状态.
主要成果:
- 通过ACF的核细胞运动是合作依赖两个ACF分子,表明ACF功能作为一个二元体.
- 核酸状态决定了ACF二元是否参与核酶体的一侧或两侧.
- 3D重建揭示了一个二元架构,ATPases在激活的ATP状态中相互面对.
结论:
- ACF作为一个二维电机,有两个ATPase协调,以双向移动核细胞.
- 这种机制不同于单向二维电机,如酶和酶.
- 这些发现为核细胞转位提供了一个新型模型,对于染色体组织和基因沉默至关重要.
相关概念视频
Nucleosome Remodeling
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Chromatin Packaging
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
Spreading of Chromatin Modifications
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...
Writers
The writer is an enzyme that can...
Histone Variants at the Centromere
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3 variants are also...
Chromatin Packaging
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order structures.
Chromatin Packaging
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...


