编码子顺序在翻译动态中的作用
Gina Cannarozzi1, Gina Cannarrozzi, Nicol N Schraudolph
1Institute of Computational Science, ETH Zurich, 8092 Zurich, Switzerland.
Cell
|April 21, 2010
概括
基因表达受代码子选择的影响. 这项研究表明,细胞更喜欢使用相同的转移RNA (tRNA) 来重复氨基酸,从而影响翻译速度并留下基因组签名.
科学领域:
- 分子生物学分子生物学
- 基因组学就是基因组学.
- 生物物理学的生物物理.
背景情况:
- 遗传密码是退化的,多个编码子编码一个单一的氨基酸.
- 众所周知,的选择会影响基因表达水平.
- 同义代码子使用的精确机制和基因组含义仍然是活跃的研究领域.
研究的目的:
- 为了调查同义代码的使用是否在编码序列中是随机的或有偏见的.
- 为了确定代使用模式是否与转移RNA (tRNA) 的可用性和使用相关.
- 阐明编码核对应对翻译动态和基因组签名的影响.
主要方法:
- 分析S. cerevisiae编码序列中的codon使用模式.
- 对同名编码子发生及其相关tRNA的相关性分析.
- 对相关与反相关的密码子序列进行比较的翻译速度测试.
主要成果:
- 同义代码的使用是非随机的;相同氨基酸的后续代码有利于相同的tRNA.
- 这种编码子-tRNA相关性在快速诱导的基因中更加明显.
- 与反相关序列相比,Codon相关性显著加快了翻译速度.
- 证据表明tRNA扩散速度较慢,并有可能在核糖体中道化tRNA.
结论:
- 翻译的动态在基因组中留下了重要的,非随机的签名.
- Codon使用偏差被积极调节以优化翻译效率.
- 核糖体相关的tRNA动态在基因表达调节中起着至关重要的作用.
相关概念视频
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First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
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Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...


