Holo-Ni(II) HpNikR是一种不对称的四聚体,含有两个不同的结位
Abby L West1, Franz St John, Pedro E M Lopes
1Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201-1180, USA.
Journal of the American Chemical Society
|September 25, 2010
概括
来自Helicobacter pylori的金属调节蛋白NikR以两种不同的方式结合离子. 对结HpNikR的这种结构洞察力可能解释其DNA结合特异性.
科学领域:
- 结构生物学 结构生物学
- 生物化学 生物化学
- 金属蛋白质是一种金属蛋白质.
背景情况:
- 杆菌尼克R (HpNikR) 是一种金属调节蛋白,根据的可用性控制基因表达.
- 了解HpNikR的结合机制对于阐明其监管功能至关重要.
研究的目的:
- 为了确定Ni(II) HpNikR. 的晶体结构.
- 为了研究HpNikR.R.内的协调环境.
主要方法:
- 整体HpNikR.的X射线晶体学 (2.37 Å分辨率)
- 密度函数理论 (DFT) 的计算.
主要成果:
- 结构显示了两个不同的协调环境中的四个离子.
- 两个离子采用预测的四坐标方形平面几何.
- 两个离子呈现出意想不到的五或六坐标几何形状,涉及胺残留物和水分子.
- DFT计算表明了五/六坐标几何体的能量优势.
结论:
- HpNikR拥有独特的协调点,其中一个点的几何形状在能量方面是有利的.
- 独特的协调环境的存在可能会影响HpNikR的DNA结合特异性和亲和力.
- 这种结构性表征为了解HpNikR在依赖基因调节中的作用提供了基础.
相关概念视频
Structural Isomerism
Isomerism in Complexes
Isomers are different chemical species that have the same chemical formula. Structural isomerism of coordination compounds can be divided into two subcategories, the linkage isomers and coordination-sphere isomers.
Linkage isomers occur when the coordination compound contains a ligand that can bind to the transition metal center through two different atoms. For example, the CN− ligand can bind through the carbon atom or through the nitrogen atom. Similarly, SCN− can be...
Isomers are different chemical species that have the same chemical formula. Structural isomerism of coordination compounds can be divided into two subcategories, the linkage isomers and coordination-sphere isomers.
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