一个跨膜二聚氨酸结合蛋白复合物的新设计和分子组装
Ivan V Korendovych1, Alessandro Senes, Yong Ho Kim
1Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Journal of the American Chemical Society
|October 16, 2010
概括
研究人员设计了一种新型的膜蛋白,PRIME,以使用精确定位的氨酸促进跨膜电子转移. 这一突破推动了膜蛋白的新设计,用于潜在的生物电子应用.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 生物有机化学 生物有机化学
背景情况:
- 膜蛋白的新设计具有挑战性.
- 了解蛋白质折叠和关联是关键.
- 跨膜电子转移需要特定的蛋白质结构.
研究的目的:
- 为了设计一种新的膜蛋白质,PRIME (膜中的氨酸).
- 通过精确定位的氨酸使得跨膜电子转移成为可能.
- 将计算设计方法扩展到膜蛋白点.
主要方法:
- 计算式蛋白质设计.
- D(2) - 对称的螺旋束排列.
- 光谱和生物物理特征 (UV-vis,CD,AUC,氧化还原电位计,EPR).
主要成果:
- 成功设计和合成了PRIME膜蛋白.
- 为了电子转移,PRIME将两种铁二甲氨酸放置在一个位置上.
- 在bis-His几何学中证明了对辅因子结合的高亲和力和特异性.
- 第二层键稳定了氨酸的结合部位.
结论:
- PRIME代表了一个成功的膜蛋白的新设计,用于电子转移.
- 该研究验证了设计复杂的膜蛋白结构的计算方法.
- 这项工作为工程膜蛋白在生物电子学和能量转换领域开辟了道路.
相关概念视频
Structure of Porins
Mitochondria, chloroplasts, and gram-negative bacteria have transmembrane, beta-barrel proteins called porins to mediate the free diffusion of ions and metabolites across the membrane. Mitochondrial porin precursors contain conserved amino acid sequences called beta signals at their C-terminal. Beta signals have a motif of PoXGXXHyXHy (Po-Polar, X-Any amino acid, G-Glycine, Hy-LargeHydrophobic), which are crucial for precursor recognition to initiate precursor assembly. Beta-barrel precursors...
Multi-pass Transmembrane Proteins and β-barrels
In multi-pass transmembrane proteins, the polypeptide chain crosses the membrane more than once. The transmembrane polypeptide chain either forms an α-helix or β-strand structure. α-Helix containing multi-pass transmembrane proteins are ubiquitous, whereas β-strand containing ones are mainly found in gram-negative bacteria, mitochondria, and chloroplasts.
α-Helix containing multi-pass transmembrane proteins
Multi-pass transmembrane proteins such as G-protein-linked receptors (GPCRs) and...
α-Helix containing multi-pass transmembrane proteins
Multi-pass transmembrane proteins such as G-protein-linked receptors (GPCRs) and...
Protein Complex Assembly
Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types. Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Porin Insertion in the Outer Mitochondrial Membrane
Porins are beta-barrel proteins translocated to the mitochondrial outer membrane through the TOM complex into the intermembrane space. Porin precursors bind TIM chaperones within the intermembrane space and are guided to the Sorting and Assembly Machinery complex or SAM complex on the outer mitochondrial membrane.
Three models describe the assembly of porins by the SAM complex and their insertion into the outer membrane. Model 1 suggests that porins are assembled outside the SAM channel as the...
Three models describe the assembly of porins by the SAM complex and their insertion into the outer membrane. Model 1 suggests that porins are assembled outside the SAM channel as the...
Insertion of Multi-pass Transmembrane Proteins in the RER
The rough ER membrane synthesizes, assembles, and embeds transmembrane proteins in diverse topologies. These proteins function as transporters or channels and can remain in the ER membrane or are sent to the Golgi complex, lysosome, and cell membrane.
The multipass transmembrane proteins are the type IV integral membrane proteins with multiple topogenic sequences determining their spatial arrangement in the ER membrane. Nearly all multipass proteins lack a cleavable signal sequence and use...
The multipass transmembrane proteins are the type IV integral membrane proteins with multiple topogenic sequences determining their spatial arrangement in the ER membrane. Nearly all multipass proteins lack a cleavable signal sequence and use...
Insertion of Single-pass Transmembrane Proteins in the RER
Integral membrane proteins are proteins adhered to the lipid bilayer of a cell organelle or membrane. They can be of two types: transmembrane integral proteins that span the lipid bilayer and monotopic proteins that are attached to either side of the membrane but do not pass through it.
Integral transmembrane proteins possess transmembrane and extra membrane domains. The transmembrane domains are primarily made of 20-25 hydrophobic amino acids arranged in a helical secondary confirmation. These...
Integral transmembrane proteins possess transmembrane and extra membrane domains. The transmembrane domains are primarily made of 20-25 hydrophobic amino acids arranged in a helical secondary confirmation. These...


