相关实验视频
Updated: May 8, 2026

08:33
Ubiquitin Chain Analysis by Parallel Reaction Monitoring
Published on: June 17, 2020
通过单个E2子单元的链接特异性泛素链延长的机制
Katherine E Wickliffe1, Sonja Lorenz, David E Wemmer
1Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Cell
|March 8, 2011
概括
像Ube2S这样的乌比奎E2酶使用非共价相互作用来定位乌比奎供体,使特定的K11链组装成为可能. 这种基质辅助的催化机制对于全方位链拓调节至关重要.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 细胞信号传输 细胞信号传输
背景情况:
- 乌比基链调节各种细胞过程,包括蛋白质降解和复杂组织.
- E2酶 (泛素结合酶) 是泛素链组合的关键介质,但它们的链接特异性机制尚不清楚.
研究的目的:
- 阐明K11特定的E2酶Ube2S在ubiquitin链形成中实现链接特异性的机制.
主要方法:
- 研究了Ube2S和ubiquitin之间非共价相互作用的作用.
- 分析了Ube2S对捐赠者和接受者的ubiquitin分子的识别.
- 通过Ube2S和ubiquitin.com的贡献来表征活性部位的形成.
主要成果:
- 在Ube2S中,除了活性部位的硫键外,还利用非共价相互作用来定向供体乌比奎丁.
- 静电相互作用通过Ube2S-donor ubiquitin复合体调解接受器ubiquitin的暂时识别.
- 通过识别Lys11周围的受体泛素表面,形成一个具有催化能力的活性位点,涉及Ube2S和泛素的残留物.
结论:
- 单体E2酶,如Ube2S,采用基质辅助催化,以促进链接特定的泛素链形成.
- 这种机制突显了非共价相互作用和酶基质合作在实现全域链拓特异性的重要性.
相关概念视频
Covalently Linked Protein Regulators
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein.
These groups modify specific amino acids in a protein.
Protein Complexes with Interchangeable Parts
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Regulated Protein Degradation
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
The Proteasome Structure
The ubiquitin-proteasome pathway is a well-known mechanism utilized by eukaryotic cells to remove cytoplasmic proteins that are misfolded, damaged, or no longer needed. In this pathway, the protein that needs to be eliminated undergoes a process called ubiquitination, where a chain of ubiquitin molecules is attached to the 48th lysine residue of the target protein. This ubiquitin modification helps the proteasome distinguish between a target protein and a healthy protein.
The proteasome is an...
The proteasome is an...

